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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G189400.2.p | ||||||||
Common Name | GLYMA_16G189400 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 23990.4 Da PI: 4.6183 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 39.9 | 9.8e-13 | 3 | 34 | 15 | 48 |
HHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 15 avkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 ++++lG++ W+ Ia++++ gRt++++k++w++yl Glyma.16G189400.2.p 3 LHHMLGNK-WSQIAQHLP-GRTDNEIKNYWHSYL 34 69******.*********.************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 20.627 | 1 | 38 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-17 | 3 | 35 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.25E-10 | 3 | 40 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.85E-8 | 3 | 34 | No hit | No description |
Pfam | PF00249 | 2.6E-11 | 3 | 34 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0010018 | Biological Process | far-red light signaling pathway | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
MVLHHMLGNK WSQIAQHLPG RTDNEIKNYW HSYLKKKEIK AKEMESDKEI QHASSSSDTM 60 ENSLSPQKLA TQDPSYSLLE NLDKSIAHND NFFSQSYNFS KEACQSSLPL PKLLFSEWLS 120 VDQVDGGSSV NSDDSLVLGN EFDQNSTFQE AIMHMLEENF GEEYHNSLIH SSTTEVYNSQ 180 LKSTNQVDGS DFINCIPGNE LCSNFSLTNH AM* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.20126 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G189400.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548192.1 | 1e-154 | transcription factor LAF1 | ||||
TrEMBL | I1MPU4 | 1e-155 | I1MPU4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G31280.1 | 1e-154 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G52260.1 | 1e-18 | myb domain protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G189400.2.p |