PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G178700.1.p
Common NameGLYMA_16G178700, LOC100783949
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 302aa    MW: 33551.1 Da    PI: 9.7071
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G178700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding391.9e-1257101147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT+ E++++++a++++  + Wk+I + +g  ++  q++s+ qky
  Glyma.16G178700.1.p  57 RENWTEPEHDKFLEAIQLFDRD-WKKIEAFVG-SKSVIQIRSHAQKY 101
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.57E-1551107IPR009057Homeodomain-like
PROSITE profilePS5129413.91152106IPR017930Myb domain
TIGRFAMsTIGR015578.8E-1855104IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.605.8E-65697IPR009057Homeodomain-like
SMARTSM007175.2E-1056104IPR001005SANT/Myb domain
PfamPF002493.5E-1057101IPR001005SANT/Myb domain
CDDcd001677.92E-859102No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MVSKNPNPPE GFYLDPSGGM PLPGMPPFAS VSAATAANSP EDAAKKIRKP YTITKSRENW  60
TEPEHDKFLE AIQLFDRDWK KIEAFVGSKS VIQIRSHAQK YFLKVQKSGT SEHLPPPRPK  120
RKAAHPYPQK ASKNAPVLSQ VSGRFQSSSA LLEPGYILKN DAPPMLKTPI MNTVASSWSN  180
NTLQTANLSP VTKVNNPCSS GESTPKVWPV GESNCQGNKI HPLRVLPDFT QVYGFIGSVF  240
DPNATEHLQK LKKMDRIDVE TVLLLMRNLS INLTSPDFED HRKLLSSYEV EPERDDNYQR  300
G*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.209400.0flower| leaf| pod| root| stem
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00625PBMTransfer from PK02532.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G178700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932340.0BT093234.1 Soybean clone JCVI-FLGm-17C23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001240048.10.0uncharacterized protein LOC100783949
SwissprotQ8H0W31e-118RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A445GK890.0A0A445GK89_GLYSO; Protein REVEILLE 6
TrEMBLC6T7150.0C6T715_SOYBN; Uncharacterized protein
STRINGGLYMA16G29740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.21e-102MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]