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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.16G168400.1.p |
| Common Name | GLYMA_16G168400, LOC100101886 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
bZIP |
| Protein Properties |
Length: 427aa MW: 47479.7 Da PI: 10.3394 |
| Description |
bZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.16G168400.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | bZIP_1 | 31.2 | 4.8e-10 | 267 | 325 | 5 | 63 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63
kr++r+ NR +A rs +RK ++ eLe+kv++L++e + L +l +l+ l++++
Glyma.16G168400.1.p 267 KRAKRMLANRQSAARSKERKIRYTSELEKKVQTLQTEATNLSAQLTMLQRDTTDLTAQN 325
9***********************************************99999988887 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 427 aa
Download sequence Send
to blast |
MMHFFTIGYT QLPSTFCSLK SIFFFASTCS SANSHNHLKT ESQPSLLLLL SLSLWYHHSS 60
PHKRKKKEER TNKPFFFKRK KERKGKIKFF FFFFSFSMDP KFIGKPLAMV DLDRDRMSER 120
GSHHRRSHSD TSFRFAANFD ELLLFDPSDL DISGLPSPLP LPSQGAGGVV PMSVVSEESG 180
GRPRRSGASA GGHLRSLSVD SDFFDGLGSG VGGDERGAGN GGGERHSNSM EGSSTTSFEA 240
DSATMMDGMK KATAPDKLAE LALTDPKRAK RMLANRQSAA RSKERKIRYT SELEKKVQTL 300
QTEATNLSAQ LTMLQRDTTD LTAQNKELKL RLQAFEQEAQ LREDLNEALK KELQRLRVQS 360
ACWGAMTGGN PSFGGIFNQL ASQLAMQQLS NSVPHQHQTQ HQPQVGMPPP PSGQKHPKFM 420
DFNQQK*
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| Nucleic Localization
Signal ? help
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| No. |
Start |
End |
Sequence |
| 1 | 62 | 83 | KRKKKEERTNKPFFFKRKKERK |
| 2 | 64 | 80 | KKKEERTNKPFFFKRKK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Mostly expressed in dividing cells, present in leaves, roots and seedlings. {ECO:0000269|PubMed:15108305, ECO:0000269|PubMed:15824315}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds specifically to the VIP1 response elements (VREs) DNA sequence 5'-ACNGCT-3' found in some stress genes (e.g. TRX8 and MYB44), when phosphorylated/activated by MPK3. Required for Agrobacterium VirE2 nuclear import and tumorigenicity. Promotes transient expression of T-DNA in early stages by interacting with VirE2 in complex with the T-DNA and facilitating its translocation to the nucleus, and mediates stable genetic transformation by Agrobacterium by binding H2A histone. Prevents cell differentiation and shoot formation. Limits sulfate utilization efficiency (SUE) and sulfate uptake, especially in low-sulfur conditions. {ECO:0000269|PubMed:11432846, ECO:0000269|PubMed:12124400, ECO:0000269|PubMed:15108305, ECO:0000269|PubMed:15824315, ECO:0000269|PubMed:17947581, ECO:0000269|PubMed:19820165, ECO:0000269|PubMed:20547563}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Transcriptionally activated during the acquisition of pluripotentiality (in protoplasts) by pericentromeric chromatin decondensation and DNA demethylation. Targeted to degradation by the proteasome by VBF and Agrobacterium virF in SCF(VBF) and SCF(virF) E3 ubiquitin ligase complexes after mediating T-DNA translocation to the nucleus. {ECO:0000269|PubMed:15108305}. |
| Publications
? help Back to Top |
- Liao Y, et al.
Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
Planta, 2008. 228(2): p. 225-40
[PMID:18365246] - Wang Y, et al.
The putative Agrobacterium transcriptional activator-like virulence protein VirD5 may target T-complex to prevent the degradation of coat proteins in the plant cell nucleus.
New Phytol., 2014. 203(4): p. 1266-81
[PMID:24865527] - Xu DB, et al.
A G-protein β subunit, AGB1, negatively regulates the ABA response and drought tolerance by down-regulating AtMPK6-related pathway in Arabidopsis.
PLoS ONE, 2015. 10(1): p. e0116385
[PMID:25635681] - Chen J, et al.
ZmbZIP91 regulates expression of starch synthesis-related genes by binding to ACTCAT elements in their promoters.
J. Exp. Bot., 2016. 67(5): p. 1327-38
[PMID:26689855] - Tsugama D,Liu S,Takano T
VIP1 is very important/interesting protein 1 regulating touch responses of Arabidopsis.
Plant Signal Behav, 2016. 11(6): p. e1187358
[PMID:27171129] - Tsugama D,Liu S,Takano T
The bZIP Protein VIP1 Is Involved in Touch Responses in Arabidopsis Roots.
Plant Physiol., 2016. 171(2): p. 1355-65
[PMID:27208231] - Takeo K,Ito T
Subcellular localization of VIP1 is regulated by phosphorylation and 14-3-3 proteins.
FEBS Lett., 2017. 591(13): p. 1972-1981
[PMID:28542772] - Wang L,Lacroix B,Guo J,Citovsky V
The Agrobacterium VirE2 effector interacts with multiple members of the Arabidopsis VIP1 protein family.
Mol. Plant Pathol., 2018. 19(5): p. 1172-1183
[PMID:28802023]
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