PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 454aa MW: 49559.2 Da PI: 6.9726

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G164800.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	64.9	1.7e-20	210	259	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp + +r++lg+f+t+e Aa+a+++a+++++g Glyma.16G164800.1.p 210 KYRGVRQRP-WGKWAAEIRDP-----HkaARVWLGTFDTEEAAARAYDEAALRFRG 259 8******.******7.....337***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.730.10	8.1E-33	209	268	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	9.81E-23	210	268	IPR016177	DNA-binding domain
PROSITE profile	PS51032	25.791	210	267	IPR001471	AP2/ERF domain
SMART	SM00380	4.6E-38	210	273	IPR001471	AP2/ERF domain
Pfam	PF00847	1.9E-14	210	259	IPR001471	AP2/ERF domain
CDD	cd00018	7.09E-22	210	269	No hit	No description
PRINTS	PR00367	4.8E-11	211	222	IPR001471	AP2/ERF domain
PRINTS	PR00367	4.8E-11	233	249	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MSLLTVAHQR GSGEFIRFTE SHGGGGDDVS GDGEHGCGHD DGSGAGGSLG LNFNQVMQQG 60 EVTMQGGSLV SGYNRGDPEL REIVSALTHV VSSGSGQRST EWTQQSGFPM MSASSLSRLS 120 AFSSSSPSPS SGASWVGHKR GREEEENSTS HNLMQQQQQS APRLFRNIGD FMVPSQGDSS 180 SVTEEAPTST TTTVTAVTEN PPGGGERRRK YRGVRQRPWG KWAAEIRDPH KAARVWLGTF 240 DTEEAAARAY DEAALRFRGN RAKLNFPENV RAVPPIQPFQ ATTRLTVSDS TTSQFRPLSA 300 VAPPFIQQPQ IQGSSDLIRD YLQYSQLLQS DFQQQQIQQQ QQQQRQQQQR QRQQRQQQQQ 360 QQQQPSSLLQ QLYYNAQFAS LQSPSMLSSS PSFSSSVSPA PFPLFTTSAS FPLFSSQQMG 420 YFQPPESRNP AGGVPEFPTS TWSDTSSQPP PSG*

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MSLLTVAHQR GSGEFIRFTE SHGGGGDDVS GDGEHGCGHD DGSGAGGSLG LNFNQVMQQG  60
EVTMQGGSLV SGYNRGDPEL REIVSALTHV VSSGSGQRST EWTQQSGFPM MSASSLSRLS  120
AFSSSSPSPS SGASWVGHKR GREEEENSTS HNLMQQQQQS APRLFRNIGD FMVPSQGDSS  180
SVTEEAPTST TTTVTAVTEN PPGGGERRRK YRGVRQRPWG KWAAEIRDPH KAARVWLGTF  240
DTEEAAARAY DEAALRFRGN RAKLNFPENV RAVPPIQPFQ ATTRLTVSDS TTSQFRPLSA  300
VAPPFIQQPQ IQGSSDLIRD YLQYSQLLQS DFQQQQIQQQ QQQQRQQQQR QRQQRQQQQQ  360
QQQQPSSLLQ QLYYNAQFAS LQSPSMLSSS PSFSSSVSPA PFPLFTTSAS FPLFSSQQMG  420
YFQPPESRNP AGGVPEFPTS TWSDTSSQPP PSG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	4e-22	209	270	1	63	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	205	210	ERRRKY

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.35107	0.0	hypocotyl\| leaf\| stem

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G164800.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031092	0.0	KT031092.1 Glycine max clone HN_CCL_185 AP2-EREBP transcription factor (Glyma16g27950.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014623949.1	0.0	ethylene-responsive transcription factor ABR1 isoform X1
TrEMBL	I1MP48	0.0	I1MP48_SOYBN; AP2-EREBP transcription factor
STRING	GLYMA16G27950.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4919	32	53
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50080.1	1e-28	ethylene response factor 110

Link Out ? help Back to Top
Phytozome	Glyma.16G164800.1.p
Entrez Gene	100817436

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]