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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G154100.1.p | ||||||||
Common Name | GLYMA_16G154100, LOC100792432 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 337aa MW: 37769.6 Da PI: 5.4666 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 57.1 | 4.5e-18 | 33 | 83 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y GVr++ +g+WvAeI+d + ++ r +lg++ taeeAa+a+++a+ l+g Glyma.16G154100.1.p 33 SKYVGVRQRA-SGKWVAEIKDTT---QKIRMWLGTYETAEEAARAYDEAACLLRG 83 89*****999.7*********32...35**********************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 9.33E-32 | 33 | 90 | No hit | No description |
Pfam | PF00847 | 6.9E-13 | 33 | 83 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.35E-19 | 33 | 91 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 4.4E-34 | 34 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.7E-27 | 34 | 90 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.427 | 34 | 91 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 35 | 46 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.8E-7 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MEIQFQHPKQ HLRANTSKGG KVFKGRNNNK TKSKYVGVRQ RASGKWVAEI KDTTQKIRMW 60 LGTYETAEEA ARAYDEAACL LRGSNTRTNF ITRVSLDSPL ASRIQNLLNS RNGTKTKHQE 120 QDVETCHTRI KSNRQESSVA LAEGTCPPQH DELRFESSLE DMSTFSIQPY IDQDCLQKKI 180 LVENEKKRRV NSTTSTASAS TSNSTNSSNN SDTCENSLSS ETTQNTQQFD DDDDAYRPDL 240 SNFIGSESGS QNNPSWGFEP SSFVHFPFSQ VMDVANLPDI AGLELPDFER MKVERQISAS 300 LYAINGVQEY MDTVTVQDSN NNVAIWDFPP LCSFLC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 1e-13 | 25 | 100 | 5 | 81 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36283 | 0.0 | seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G154100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT092344 | 0.0 | BT092344.1 Soybean clone JCVI-FLGm-15F24 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624309.1 | 0.0 | ethylene-responsive transcription factor ERN1 | ||||
TrEMBL | I1MNV3 | 0.0 | I1MNV3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G27040.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF18699 | 4 | 6 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G19790.1 | 1e-23 | related to AP2 11 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G154100.1.p |
Entrez Gene | 100792432 |