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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G152100.1.p |
Common Name | GLYMA_16G152100 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
NAC |
Protein Properties |
Length: 411aa MW: 46655.3 Da PI: 6.7774 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G152100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 181.3 | 2.4e-56 | 23 | 149 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdee++++yL++kv ++ +++ ++i e+d +k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat+sgyWkatgkdk
Glyma.16G152100.1.p 23 LPPGFRFHPTDEEIITCYLTEKVLNRAFSA-TAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDK 111
79**************************99.88***************99999************************************* PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
e+++ k++lvg+kktLvfy+grapkgekt+Wvmhe+rl
Glyma.16G152100.1.p 112 EIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRL 149
****99******************************98 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 411 aa
Download sequence Send
to blast |
MMEEPVVVNK GDYDHDHDQP LDLPPGFRFH PTDEEIITCY LTEKVLNRAF SATAIGEADF 60 NKCEPWDLPK KAKMGEKDWY FFCQRDRKYP TGMRTNRATQ SGYWKATGKD KEIFKGKNNL 120 VGMKKTLVFY RGRAPKGEKT NWVMHEFRLD GKFACYNLPK AAKDEWVVCK VFHKSSTTTT 180 DVNKRVLPII NPGLLRMNSS NGEDLLFDFS SLPPLVDPLF DQTSNKHIDN DFKGTNNTPS 240 SSSAKLPSSS GYYLPNFNNN NNQQMLMMKP EEHKIYEIPI NNYASTSQVD FTTTNNPMGI 300 STSNNNILLS QPQIRTQNST SVPFNMFQDC YNHTHQGKQC KMEQFSIDST KKQPVVSASQ 360 DTCLSNDTSS VVSKQDNNMG RNKALYEDNF EGPSSVATTL SDLECLWDDY *
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-51 | 21 | 178 | 15 | 169 | NO APICAL MERISTEM PROTEIN |
3swm_A | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swm_B | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swm_C | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swm_D | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_A | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_B | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_C | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
3swp_D | 3e-51 | 21 | 178 | 18 | 172 | NAC domain-containing protein 19 |
4dul_A | 3e-51 | 21 | 178 | 15 | 169 | NAC domain-containing protein 19 |
4dul_B | 3e-51 | 21 | 178 | 15 | 169 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Gma.23316 | 0.0 | flower| hypocotyl| leaf| root| somatic embryo |
Functional Description ? help
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Source |
Description |
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | EU661922 | 0.0 | EU661922.1 Glycine max NAC domain protein (NAC23) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
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Hit ID |
E-value |
Description |
AT5G18270.1 | 1e-109 | Arabidopsis NAC domain containing protein 87 |