PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G152100.1.p
Common NameGLYMA_16G152100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 411aa    MW: 46655.3 Da    PI: 6.7774
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G152100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM181.32.4e-56231491128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdee++++yL++kv ++ +++ ++i e+d +k+ePwdLpkk+k +ek+wyfF++rd+ky+tg r+nrat+sgyWkatgkdk
  Glyma.16G152100.1.p  23 LPPGFRFHPTDEEIITCYLTEKVLNRAFSA-TAIGEADFNKCEPWDLPKKAKMGEKDWYFFCQRDRKYPTGMRTNRATQSGYWKATGKDK 111
                          79**************************99.88***************99999************************************* PP

                  NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                          e+++ k++lvg+kktLvfy+grapkgekt+Wvmhe+rl
  Glyma.16G152100.1.p 112 EIFKGKNNLVGMKKTLVFYRGRAPKGEKTNWVMHEFRL 149
                          ****99******************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-6121174IPR003441NAC domain
PROSITE profilePS5100558.03623174IPR003441NAC domain
PfamPF023654.7E-2924149IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MMEEPVVVNK GDYDHDHDQP LDLPPGFRFH PTDEEIITCY LTEKVLNRAF SATAIGEADF  60
NKCEPWDLPK KAKMGEKDWY FFCQRDRKYP TGMRTNRATQ SGYWKATGKD KEIFKGKNNL  120
VGMKKTLVFY RGRAPKGEKT NWVMHEFRLD GKFACYNLPK AAKDEWVVCK VFHKSSTTTT  180
DVNKRVLPII NPGLLRMNSS NGEDLLFDFS SLPPLVDPLF DQTSNKHIDN DFKGTNNTPS  240
SSSAKLPSSS GYYLPNFNNN NNQQMLMMKP EEHKIYEIPI NNYASTSQVD FTTTNNPMGI  300
STSNNNILLS QPQIRTQNST SVPFNMFQDC YNHTHQGKQC KMEQFSIDST KKQPVVSASQ  360
DTCLSNDTSS VVSKQDNNMG RNKALYEDNF EGPSSVATTL SDLECLWDDY *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-512117815169NO APICAL MERISTEM PROTEIN
1ut4_B3e-512117815169NO APICAL MERISTEM PROTEIN
1ut7_A3e-512117815169NO APICAL MERISTEM PROTEIN
1ut7_B3e-512117815169NO APICAL MERISTEM PROTEIN
3swm_A3e-512117818172NAC domain-containing protein 19
3swm_B3e-512117818172NAC domain-containing protein 19
3swm_C3e-512117818172NAC domain-containing protein 19
3swm_D3e-512117818172NAC domain-containing protein 19
3swp_A3e-512117818172NAC domain-containing protein 19
3swp_B3e-512117818172NAC domain-containing protein 19
3swp_C3e-512117818172NAC domain-containing protein 19
3swp_D3e-512117818172NAC domain-containing protein 19
4dul_A3e-512117815169NAC domain-containing protein 19
4dul_B3e-512117815169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.233160.0flower| hypocotyl| leaf| root| somatic embryo
Functional Description ? help Back to Top
Source Description
UniProtBinds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G152100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU6619220.0EU661922.1 Glycine max NAC domain protein (NAC23) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001238186.20.0NAC domain protein
RefseqXP_028205611.10.0NAC domain-containing protein 87-like
SwissprotQ9FK441e-113NAC87_ARATH; NAC domain-containing protein 87
TrEMBLA0A0B2RLC10.0A0A0B2RLC1_GLYSO; NAC domain-containing protein 100
TrEMBLI1MNT10.0I1MNT1_SOYBN; Uncharacterized protein
STRINGGLYMA16G26810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40934171
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18270.11e-109Arabidopsis NAC domain containing protein 87
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]