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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G148700.1.p | ||||||||
Common Name | GLYMA_16G148700, LOC100809600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 275aa MW: 29657.2 Da PI: 4.6305 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.4 | 2e-19 | 31 | 80 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIrdps+ + r++lg+f+taeeAa a+++a+++++g Glyma.16G148700.1.p 31 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTAEEAALAYDKAARSMRG 80 588******.**********965...5*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 6.15E-21 | 31 | 88 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 1.1E-29 | 31 | 87 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 21.193 | 31 | 88 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 3.32E-31 | 31 | 87 | No hit | No description |
SMART | SM00380 | 5.9E-34 | 31 | 94 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 32 | 43 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 4.6E-12 | 32 | 80 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.1E-8 | 54 | 70 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MKPYTSSPSS SKSKKKPTTT QQDHETAWGG RYLGVRRRPW GRYAAEIRDP STKERHWLGT 60 FDTAEEAALA YDKAARSMRG SRARTNFIYP DTPPGSSVTS ILSPDEQTQT QIHQAQEELS 120 SLFNPNPFPQ PDPNPQFSLC GFSGIPNTPT FSATEEIASS GGYSYSYGYT EGGTGVESSH 180 FKLFDDGETQ LPPLPPDITS SMGYEMSNGL YGNDVGFSDP SCGANASGSG YPYSGFESGD 240 YVVHSPLFSA MPSVSDNVAT GHEGFDLGSS SYFF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 3e-20 | 32 | 87 | 3 | 59 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
2gcc_A | 3e-20 | 27 | 87 | 1 | 62 | ATERF1 |
3gcc_A | 3e-20 | 27 | 87 | 1 | 62 | ATERF1 |
5wx9_A | 1e-19 | 30 | 87 | 13 | 71 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29796 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G148700.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097638 | 0.0 | BT097638.1 Soybean clone JCVI-FLGm-16E6 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548039.1 | 0.0 | ethylene-responsive transcription factor LEP | ||||
TrEMBL | I1MNQ2 | 0.0 | I1MNQ2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G26460.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3904 | 31 | 61 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G13910.1 | 1e-33 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G148700.1.p |
Entrez Gene | 100809600 |