PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G147500.1.p
Common NameGLYMA_16G147500, Glyma16g26320.1, LOC100806383
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 240aa    MW: 26247.6 Da    PI: 6.5202
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G147500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP265.51e-204493255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                         +y+GVr+++ +g+W+AeIrdp+    + +r++lg+f+tae Aa a++aa+++++g
  Glyma.16G147500.1.p 44 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAMAYDAAALRFKG 93
                         8********.**********94....45************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.106.0E-3343102IPR001471AP2/ERF domain
CDDcd000181.05E-2143102No hitNo description
PfamPF008473.8E-144493IPR001471AP2/ERF domain
SMARTSM003803.3E-3744107IPR001471AP2/ERF domain
PROSITE profilePS5103225.27744101IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-2244102IPR016177DNA-binding domain
PRINTSPR003679.5E-124556IPR001471AP2/ERF domain
PRINTSPR003679.5E-126783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MSTNQNTTFF PLPHGQITTS EFVNSQNNPS QATNQGIDDI RKKHYRGVRQ RPWGKWAAEI  60
RDPKKAARVW LGTFDTAEAA AMAYDAAALR FKGNKAKLNF PERVVMPIPS QTNTNYNNNN  120
TTSSSSAPTT QPSSLPPPPS QSLQNSSNNN SSLSSEGFPN LEEYARLLNC SDDDDFQRVA  180
LGLYQHHNNE DYIYGSSQPP PVPFFVSSYS SSSSAMASSF SDFLGQGGSG FDEENKRGS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-2743104163ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.577570.0cotyledon
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G147500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310910.0KT031091.1 Glycine max clone HN_CCL_208 AP2-EREBP transcription factor (Glyma16g26320.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548033.11e-177ethylene-responsive transcription factor ERF113
TrEMBLI1MNP11e-176I1MNP1_SOYBN; AP2-EREBP transcription factor
STRINGGLYMA16G26320.11e-177(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2013335
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61890.14e-31ERF family protein
Publications ? help Back to Top
  1. Chai C, et al.
    Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance.
    BMC Genomics, 2015. 16: p. 596
    [PMID:26268547]