PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G142800.2.p
Common NameGLYMA_16G142800, LOC100814959
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 778aa    MW: 84665 Da    PI: 7.4998
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G142800.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.42.8e-095716081954
                          HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                          Fe   ++yps +++  LA+++gL+ +qV++WF N R +
  Glyma.16G142800.2.p 571 FEHflHPYPSDADKHLLARQTGLSRNQVSNWFINARVR 608
                          664459******************************88 PP
2BELL120.57.4e-39431502172
                 BELL   1 erqelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72 
                          +r e+q++k+kLl++l+eVd+rY++y+eq+++v+++F++v+g g+a pYt+lA+ka+SrhFrcLkdai+ q+
  Glyma.16G142800.2.p 431 DRIEHQRRKVKLLTMLDEVDRRYSHYCEQMHMVVNAFDMVMGFGAAVPYTALAQKAMSRHFRCLKDAITAQL 502
                          589******************************************************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005741.8E-78363500IPR006563POX domain
PfamPF075262.9E-51369499IPR006563POX domain
PROSITE profilePS5007112.568549612IPR001356Homeobox domain
SMARTSM003892.0E-9552616IPR001356Homeobox domain
CDDcd000864.55E-13552613No hitNo description
SuperFamilySSF466895.99E-17554619IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-28555618IPR009057Homeodomain-like
PfamPF059203.9E-18569608IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 778 aa     Download sequence    Send to blast
MGIATPSSSL PSILSHSKTH QQQIHHSNSM SQDYHHHHHQ GIFSFPNGFE RSAATTMTHQ  60
DPHHHHHHHH QQQQIRRDKV RVQGFEPPPQ QTLLPIEEDE SGSLPVYETA GMLSEMFNFP  120
PGAAELLEQQ QQQQQQQPMA MTTTFRASPS ARAVGSGGSE WYGNRQGMLS GLGPLGDSKN  180
HHHHHGSVNS RDSSSSSIVQ NQHHHHHNHQ HHQMSSINAD SAAAMQLFLM NPQTTRSPSP  240
PPPPPPPPSS TLHMLLPTFP PGSGGSFSQF TWLPDTTQEG GGPSTEGPGH GQGLSLSLSS  300
SLEAAKAEEL RMGNSGFLYY NQASGGPSSY KSTLGGHHHQ ALLAQTHQGH VGFGAASSST  360
SSLGVVNALR NSKYAKAAQE LLEEFCSVGR GQFKKNKFNR QLSNPSSNLR GSGGGASSSS  420
SKDVPPLSAA DRIEHQRRKV KLLTMLDEVD RRYSHYCEQM HMVVNAFDMV MGFGAAVPYT  480
ALAQKAMSRH FRCLKDAITA QLKHSCEVLG EKDGAGNSGL TKGETPRLKM LEQSLRQQRA  540
FHQMGMMEQE AWRPQRGLPE RSVNILRAWL FEHFLHPYPS DADKHLLARQ TGLSRNQVSN  600
WFINARVRLW KPMVEDMYQQ ELKEAEGAEE EREGNQSSSN NSGHQLAQTP TPSTTASTAT  660
APPPPTTTPP TGKRSDSESD PSLAPINNTT STAAMTVTAS EVTQLSELPR TMVADESCRH  720
GSLVATEFGT ASAASEIGST LIRFGTTAGD VSLTLGLRHA GNMPEKTPFS VRDFGGI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3k2a_A3e-16558615562Homeobox protein Meis2
3k2a_B3e-16558615562Homeobox protein Meis2
4xrm_A3e-16558615562Homeobox protein Meis2
4xrm_B3e-16558615562Homeobox protein Meis2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.442550.0cotyledon| stem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in lateral organs. {ECO:0000269|PubMed:17873098}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that establishes leaf shape by repressing growth in specific subdomains of the leaf. Negatively regulates knox homeobox gene KNAT1/BP expression.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G142800.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599397.10.0BEL1-like homeodomain protein 4
RefseqXP_014624496.10.0BEL1-like homeodomain protein 4
RefseqXP_028205573.10.0BEL1-like homeodomain protein 4
RefseqXP_028205574.10.0BEL1-like homeodomain protein 4
SwissprotQ9SW801e-160BLH2_ARATH; BEL1-like homeodomain protein 2
TrEMBLA0A445GII50.0A0A445GII5_GLYSO; BEL1-like homeodomain protein 2 isoform A
TrEMBLK7MHC00.0K7MHC0_SOYBN; Uncharacterized protein
STRINGGLYMA16G25770.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23760.31e-143BEL1-like homeodomain 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]