PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 512aa MW: 52998.3 Da PI: 7.5974

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G141100.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	60	82	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H Glyma.16G141100.2.p 60 FVCEICNKGFQRDQNLQLHRRGH 82 89*******************88 PP
2	zf-C2H2	11.3	0.0011	136	158	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H +++ Glyma.16G141100.2.p 136 WKCDKCSKKYAVQSDWKAHSKVC 158 58*****************9877 PP
3	zf-C2H2	11.7	0.00081	166	184	5	23
TTTEEESSHHHHHHHHHHT CS zf-C2H2 5 dCgksFsrksnLkrHirtH 23 dCg++Fsr++++ +H + Glyma.16G141100.2.p 166 DCGTVFSRRDSFITHRAFC 184 9**************8765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	59	82	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.99E-7	59	82	No hit	No description
SMART	SM00355	0.017	60	82	IPR015880	Zinc finger, C2H2-like
Pfam	PF12171	8.2E-5	60	82	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	60	82	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	62	82	IPR007087	Zinc finger, C2H2
SMART	SM00355	200	101	131	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	9.1E-4	124	157	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	4.99E-7	131	156	No hit	No description
SMART	SM00355	150	136	156	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009937	Biological Process	regulation of gibberellic acid mediated signaling pathway
GO:0010029	Biological Process	regulation of seed germination
GO:0010431	Biological Process	seed maturation
GO:0005634	Cellular Component	nucleus
GO:0044212	Molecular Function	transcription regulatory region DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 512 aa Download sequence Send to blast
MPVDLDNAST ASGEAASVSS SGHQTKPAVP KKKRNLPGMP DPEAEVIALS PTALLATNRF 60 VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVRKRV YVCPEPTCVH HDPARALGDL 120 TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKVCGT REYKCDCGTV FSRRDSFITH 180 RAFCDVLAEE NVRSHAVVKD NSENDSKVLT LTGDSPPLQP VSATVATTTT QTNSAMSCGL 240 QTQNLELPET NPPQVIEEEP QGATAVSGSC GSNSTCSTSN GGATSNSNSS SSVFAGLFAS 300 STASGSLQSQ TPAFSDLIRA MGPPEHPADL ISAPSSSEAI SLCLSTTSAS PIFATGGQQY 360 VSSPPQPAMS ATALLQKAAQ MGAAATNASL LRGFGIVSSS SLASTSSGQQ NGLQWGQQQL 420 ESESGSVPAA GLGLGLPCED GGSGLKELMM GTPSMFGPKH TTLDFLGLGM AAGGTAGGGL 480 SALITSIGGG LDVTAAFGNG DFSGKDIGGS S*

Sequence ? help Back to Top

Protein Sequence Length: 512 aa Download sequence Send to blast

MPVDLDNAST ASGEAASVSS SGHQTKPAVP KKKRNLPGMP DPEAEVIALS PTALLATNRF  60
VCEICNKGFQ RDQNLQLHRR GHNLPWKLRQ RSSKEVRKRV YVCPEPTCVH HDPARALGDL  120
TGIKKHFCRK HGEKKWKCDK CSKKYAVQSD WKAHSKVCGT REYKCDCGTV FSRRDSFITH  180
RAFCDVLAEE NVRSHAVVKD NSENDSKVLT LTGDSPPLQP VSATVATTTT QTNSAMSCGL  240
QTQNLELPET NPPQVIEEEP QGATAVSGSC GSNSTCSTSN GGATSNSNSS SSVFAGLFAS  300
STASGSLQSQ TPAFSDLIRA MGPPEHPADL ISAPSSSEAI SLCLSTTSAS PIFATGGQQY  360
VSSPPQPAMS ATALLQKAAQ MGAAATNASL LRGFGIVSSS SLASTSSGQQ NGLQWGQQQL  420
ESESGSVPAA GLGLGLPCED GGSGLKELMM GTPSMFGPKH TTLDFLGLGM AAGGTAGGGL  480
SALITSIGGG LDVTAAFGNG DFSGKDIGGS S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-34	132	201	3	72	Zinc finger protein JACKDAW
5b3h_F	3e-34	132	201	3	72	Zinc finger protein JACKDAW
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.30381	0.0	leaf

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Strongly up-regulated during seed development. {ECO:0000269\|PubMed:21571950}.
Uniprot	TISSUE SPECIFICITY: At 3 days post anthesis (DPA), expressed in the chalazal endosperm region. By 6 DPA, expressed in the endosperm and embryo. In fully germinated seed, strongest expression in the root tip and not detected in the cotyledons. In 4-days old seedlings, restricted to the vasculature of the cotyledons, the shoot apical meristem region, and the root tip. By 8 days, restricted to newly emerged leaves. {ECO:0000269\|PubMed:21571950}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00592	DAP	Transfer from AT5G66730	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G141100.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003547992.1	0.0	protein indeterminate-domain 2
Refseq	XP_028207144.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	1e-172	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A445GIG8	0.0	A0A445GIG8_GLYSO; Protein indeterminate-domain 1
TrEMBL	I1MNH4	0.0	I1MNH4_SOYBN; Uncharacterized protein
STRING	GLYMA16G25550.1	0.0	(Glycine max)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-139	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	Glyma.16G141100.2.p
Entrez Gene	100783947

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]