PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G138700.1.p
Common NameGLYMA_16G138700, LOC100800005
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ZF-HD
Protein Properties Length: 330aa    MW: 37142.8 Da    PI: 8.1453
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G138700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer103.31.6e-32109163459
          ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                          +rY+eClkNhAas+Ggh++DGCgEfmp+ geegt++++kCaAC+CHRnFHR+e+++
  Glyma.16G138700.1.p 109 FRYRECLKNHAASMGGHVTDGCGEFMPN-GEEGTPESFKCAACECHRNFHRKEPHQ 163
                          79*************************8.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.2E-29109161IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257749.0E-20109160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015663.0E-30110160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.751111160IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.601.3E-29241315IPR009057Homeodomain-like
SuperFamilySSF466891.6E-19241314IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-26253310IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MDMREQDKVI EMPSTLDYNN SSSSPKLSSP IGERCDQLPP HQSHTLVFTD PPQTSSHHHN  60
LYPPSLPPNP LQLPQPHHRP RRDPDPSPII SPPRTTPPQP QPHTTTTLFR YRECLKNHAA  120
SMGGHVTDGC GEFMPNGEEG TPESFKCAAC ECHRNFHRKE PHQGVVLESQ LLQHVLNKNS  180
RNINILHSPH SHHVLHGVVG GPVQPVMLGF GGSGPAESSS EDLNMFQTLD HRGGGNLLSS  240
SVQQPPLSSS SSKKRFRTKF TQQQKDRMME FAEKLGWKIQ KQDEQELHQF CSQVGVRRQV  300
FKVWMHNSKQ AMKKKQLNIL LESVESYEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A3e-222523111675ZF-HD homeobox family protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.386270.0stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G138700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150348e-84AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548885.20.0zinc-finger homeodomain protein 6
TrEMBLK7MH900.0K7MH90_SOYBN; Uncharacterized protein
STRINGGLYMA16G25280.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Representative plantOGRP9116237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18350.12e-56homeobox protein 24