PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G132100.4.p | ||||||||
Common Name | GLYMA_16G132100, LOC100781981 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | SRS | ||||||||
Protein Properties | Length: 315aa MW: 34541.7 Da PI: 7.1072 | ||||||||
Description | SRS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF702 | 196.8 | 7e-61 | 109 | 247 | 3 | 154 |
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.aeaaskrkrelkskkqsalsstkl 91 g++sCqdCGnqakkdC h+RCRtCCksrg+dC+thvkstWvpa+krrerqqql a+++++++++ +++ skr+r++ +l Glyma.16G132100.4.p 109 GGGISCQDCGNQAKKDCPHMRCRTCCKSRGYDCQTHVKSTWVPASKRRERQQQLMALHQQQQEQQqQRDISKRPRDS-----------RL 187 5789************************************************9999876655443266666666654...........22 PP DUF702 92 ssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 ss+ e ++P+ vss+a frcvrvs v+d+++ +aYqtavsigGhvfkGiLyd+G+e+ Glyma.16G132100.4.p 188 SSS---GLEEEGHFPSVVSSPAEFRCVRVSCVEDSDDRYAYQTAVSIGGHVFKGILYDYGPEN 247 222...2334567************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF05142 | 4.8E-64 | 111 | 246 | IPR007818 | Protein of unknown function DUF702 |
TIGRFAMs | TIGR01623 | 1.6E-27 | 113 | 155 | IPR006510 | Zinc finger, lateral root primordium type 1 |
TIGRFAMs | TIGR01624 | 5.1E-25 | 197 | 245 | IPR006511 | Lateral Root Primordium type 1, C-terminal |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MAGLFSLVRG GDNQEENNNQ SSEIPPAETL FWYSKNDDVS SYHRGFELWN QHQEHQHHHH 60 AMHHPHARPL LQRDLYSSGV GPSRGGISDD HSSSRSAAFV AMRAAGAEGG GISCQDCGNQ 120 AKKDCPHMRC RTCCKSRGYD CQTHVKSTWV PASKRRERQQ QLMALHQQQQ EQQQQRDISK 180 RPRDSRLSSS GLEEEGHFPS VVSSPAEFRC VRVSCVEDSD DRYAYQTAVS IGGHVFKGIL 240 YDYGPENSNN NNSNNNSNNY MAGETSAVAA TAQPLNLAAA ASSAALIDPS SLYSAPANAF 300 MAGSGTQFFP HTRS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G132100.4.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014624738.1 | 0.0 | protein SHI RELATED SEQUENCE 1 | ||||
TrEMBL | A0A0R0FYR2 | 0.0 | A0A0R0FYR2_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G24510.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G19790.2 | 6e-53 | SHI-related sequence 7 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G132100.4.p |
Entrez Gene | 100781981 |