PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G130200.1.p
Common NameGLYMA_16G130200, LOC100803726
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 363aa    MW: 41920.9 Da    PI: 6.2548
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G130200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.49.2e-5671352129
                  NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          ppGfrFhPtdeelv +yL+kkv+++k++l +vike+d+y++ePwdL++  ++   e++ewyfFs++dkky+tg+r+nrat +g+Wkatg+
  Glyma.16G130200.1.p   7 PPGFRFHPTDEELVGYYLRKKVASQKIDL-DVIKEIDLYRIEPWDLQEtyRIGYeEQNEWYFFSHKDKKYPTGTRTNRATMAGFWKATGR 95 
                          9****************************.9***************953433333667******************************** PP

                  NAM  89 dkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                          dk+v++ +++l+g++ktLvfykgrap+g+ktdW+mheyrle
  Glyma.16G130200.1.p  96 DKSVYE-RTKLIGMRKTLVFYKGRAPNGQKTDWIMHEYRLE 135
                          ******.999*****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.12E-583155IPR003441NAC domain
PROSITE profilePS5100559.3336155IPR003441NAC domain
PfamPF023651.0E-287134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MMESCIPPGF RFHPTDEELV GYYLRKKVAS QKIDLDVIKE IDLYRIEPWD LQETYRIGYE  60
EQNEWYFFSH KDKKYPTGTR TNRATMAGFW KATGRDKSVY ERTKLIGMRK TLVFYKGRAP  120
NGQKTDWIMH EYRLETVENG PPQEEGWVVC RAFKKRTTNG QTKTIEGWHR NCLYDEQQQA  180
CGSVSSTVVD PNIDLMLRQQ PQRFSGAQNF MYKQEEIIEA DNNNLSFMHA EQQLVQLPHL  240
ESPSLPLAKK QSSVVSPISD NINNNEDDDN PQKGLSNTTK KVTTDWRALD KFVASQLSQE  300
ERHEIEGVSS FATHHTTTSS DMALLLLQNN SRENERNNKF NPFFNTSSTI SDCDIGICVF  360
EK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A5e-51315612169Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.575241e-164hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element formation. Expressed preferentially in procambial cells adjacent to root meristem. {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:25148240}.
UniprotTISSUE SPECIFICITY: Expressed in root metaxylem pole and in shoot pre-procambium and procambium (PubMed:18445131). Present in root developing xylems (PubMed:16103214). Specifically expressed in vessels but not in interfascicular fibers in stems (PubMed:25148240). {ECO:0000269|PubMed:16103214, ECO:0000269|PubMed:18445131, ECO:0000269|PubMed:25148240}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:25148240). {ECO:0000250|UniProtKB:Q9LVA1, ECO:0000269|PubMed:25148240}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G130200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by chitin (e.g. chitooctaose) (PubMed:17722694). Accumulates in plants exposed to callus induction medium (CIM) (PubMed:17581762). {ECO:0000269|PubMed:17581762, ECO:0000269|PubMed:17722694}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941621e-156BT094162.1 Soybean clone JCVI-FLGm-18C16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547947.10.0NAC domain-containing protein 105
RefseqXP_028206734.10.0NAC domain-containing protein 105-like
SwissprotQ9SL411e-139NAC37_ARATH; NAC domain-containing protein 37
TrEMBLA0A0B2RR730.0A0A0B2RR73_GLYSO; NAC domain-containing protein 37
TrEMBLK7MH220.0K7MH22_SOYBN; Uncharacterized protein
STRINGGLYMA16G24200.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45653459
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18060.11e-134vascular related NAC-domain protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Negi S,Tak H,Ganapathi TR
    Cloning and functional characterization of MusaVND1 using transgenic banana plants.
    Transgenic Res., 2015. 24(3): p. 571-85
    [PMID:25523085]
  3. Tan TT, et al.
    Transcription Factors VND1-VND3 Contribute to Cotyledon Xylem Vessel Formation.
    Plant Physiol., 2018. 176(1): p. 773-789
    [PMID:29133368]