PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G128300.2.p
Common NameGLYMA_16G128300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 769aa    MW: 85936.1 Da    PI: 7.8456
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G128300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.65.9e-082466347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Glyma.16G128300.2.p 24 AWTRQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 66
                         6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.19E-11871IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-51869IPR009057Homeodomain-like
PROSITE profilePS5129313.4162071IPR017884SANT domain
SMARTSM007172.7E-62169IPR001005SANT/Myb domain
PfamPF002495.3E-62466IPR001005SANT/Myb domain
CDDcd001679.16E-62467No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 769 aa     Download sequence    Send to blast
MRSQRFNCLM SYIATKKPTR QWAAWTRQEE ESFFTALRQV GKNFEKITSR VQSKNKDQVR  60
HYYYRLVRRM NKLLGPGLCL DAKNSKDTNA AMLRWWSLLE KYSCKASKLH LKPRRFKIFL  120
EALEHQLLKD RKKNVRKRPL QGGNCLPAAP TAVSNQSRAS GNDARAVKLV LVDNQNILKL  180
GPSKPSTKRT VNMGVNHSNT KGDSNTMKPT RQRKKSGTIS TAAYKKWEKA AIAGVSLVAD  240
AAEHLERAAT VKEIEQDQEN PGERCSDPAD YVLPSLAKCP QKQFVDNNVN NIMKLKLQLF  300
PIDEPTRRAL EMDKHNPHLE LTLSTRKKIS SILEHLNRKW GNSSIAAGEV MLFPYGIQRE  360
NLVNYPRWTQ ESTLSAADIY AMIGSPPIFR LRYGWFSNTE LGLLNMQVPE ASGSMLRQYK  420
SSVDNAKDPI VNSVSFPTPL TNTLSMELSE DCRTSMNRNH TLMTASTDLS NARGNNVYLN  480
TSTVESRDPT ANTPWHGKDV RDGAVTTQLE DMDELKLSSG AGLSAGEWAD SLTNISVGDL  540
LSGVSQDLDN CINPPIAESC YDVQQIPFSS DSFDAAIAAH ISRHQDRMGR SSLASHMSSI  600
WDAEETCDAF LFKKDPILQE YRPCLSPVAS LESEKKVTKR SFDKLDELSP ERERLVDDCA  660
QTDPMPMDSS ESDADVQEHL GKDFSALADM YWPDSLGPLD LEIPSSTKYH SEDLIFSDSL  720
SGLNRLIASS LDAFQNCSFF GFDKKEAPST VEARESATLS DFKIGSGI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.116410.0leaf| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G128300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358910.0AC235891.2 Glycine max clone GM_WBc0069F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028207227.10.0TSL-kinase interacting protein 1-like isoform X2
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLI1MN570.0I1MN57_SOYBN; Uncharacterized protein
STRINGGLYMA16G23840.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1