PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G128300.1.p
Common NameGLYMA_16G128300, LOC100798411
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 799aa    MW: 88789 Da    PI: 6.7894
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G128300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.2e-085496347
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Glyma.16G128300.1.p 54 AWTRQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 96
                         6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.72E-1047101IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-54999IPR009057Homeodomain-like
PROSITE profilePS5129313.41650101IPR017884SANT domain
SMARTSM007172.7E-65199IPR001005SANT/Myb domain
CDDcd001677.31E-65497No hitNo description
PfamPF002495.6E-65496IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
Sequence ? help Back to Top
Protein Sequence    Length: 799 aa     Download sequence    Send to blast
MEVEVPISLD LNNQLQPETV VSVQNGDPGV SSSVANAVNP QQPATKKPTR QWAAWTRQEE  60
ESFFTALRQV GKNFEKITSR VQSKNKDQVR HYYYRLVRRM NKLLGPGLCL DAKNSKDTNA  120
AMLRWWSLLE KYSCKASKLH LKPRRFKIFL EALEHQLLKD RKKNVRKRPL QGGNCLPAAP  180
TAVSNQSRAS GNDARAVKLV LVDNQNILKL GPSKPSTKRT VNMGVNHSNT KGDSNTMKPT  240
RQRKKSGTIS TAAYKKWEKA AIAGVSLVAD AAEHLERAAT VKEIEQDQEN PGERCSDPAD  300
YVLPSLAKCP QKQFVDNNVN NIMKLKLQLF PIDEPTRRAL EMDKHNPHLE LTLSTRKKIS  360
SILEHLNRKW GNSSIAAGEV MLFPYGIQRE NLVNYPRWTQ ESTLSAADIY AMIGSPPIFR  420
LRYGWFSNTE LGLLNMQVPE ASGSMLRQYK SSVDNAKDPI VNSVSFPTPL TNTLSMELSE  480
DCRTSMNRNH TLMTASTDLS NARGNNVYLN TSTVESRDPT ANTPWHGKDV RDGAVTTQLE  540
DMDELKLSSG AGLSAGEWAD SLTNISVGDL LSGVSQDLDN CINPPIAESC YDVQQIPFSS  600
DSFDAAIAAH ISRHQDRMGR SSLASHMSSI WDAEETCDAF LFKKDPILQE YRPCLSPVAS  660
LESEKKVTKR SFDKLDELSP ERERLVDDCA QTDPMPMDSS ESDADVQEHL GKDFSALADM  720
YWPDSLGPLD LEIPSSTKYH SEDLIFSDSL SGLNRLIASS LDAFQNCSFF GFDKKEAPST  780
VEARESATLS DFKIGSGI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.116410.0leaf| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers, roots and leaves. {ECO:0000269|PubMed:15047893}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G128300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358910.0AC235891.2 Glycine max clone GM_WBc0069F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547937.10.0TSL-kinase interacting protein 1
RefseqXP_006599337.10.0TSL-kinase interacting protein 1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLI1MN560.0I1MN56_SOYBN; Uncharacterized protein
STRINGGLYMA16G23840.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Representative plantOGRP21641015
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1