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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Glyma.16G118200.1.p | ||||||||
| Common Name | GLYMA_16G118200 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family | FAR1 | ||||||||
| Protein Properties | Length: 88aa MW: 10074.4 Da PI: 4.7296 | ||||||||
| Description | FAR1 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | FAR1 | 21.5 | 7.9e-07 | 48 | 79 | 6 | 38 |
FAR1 6 YAkevGFsvrkskskkskrngeitkrtfvCske 38
Y++ +GFsvrks+ +s + gei+++tf Cs+
Glyma.16G118200.1.p 48 YSRLIGFSVRKSHAVRS-QFGEIVQQTFLCSRG 79
99**************9.7777*********85 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03101 | 1.6E-4 | 48 | 79 | IPR004330 | FAR1 DNA binding domain |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 88 aa Download sequence Send to blast |
MKKTMVLDSG SPLISFDSMV DIYNIDMHNL TNDEVEHLDF LDWEMAWYSR LIGFSVRKSH 60 AVRSQFGEIV QQTFLCSRGL REDTGLT* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Glyma.16G118200.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| TrEMBL | A0A445GHQ2 | 2e-58 | A0A445GHQ2_GLYSO; Uncharacterized protein | ||||
| TrEMBL | K7MGS7 | 2e-58 | K7MGS7_SOYBN; Uncharacterized protein | ||||
| STRING | GLYMA16G22516.1 | 3e-59 | (Glycine max) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF3290 | 7 | 52 |
| Representative plant | OGRP30 | 12 | 351 |
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Glyma.16G118200.1.p |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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