PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G095200.1.p
Common NameGLYMA_16G095200, LOC780552
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bZIP
Protein Properties Length: 417aa    MW: 44472.8 Da    PI: 6.4539
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G095200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_168.31.2e-21307369163
                          XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
               bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                          e+elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L++eN +L++e+++++ e+++l+se+
  Glyma.16G095200.1.p 307 ERELKRQRRKQSNRESARRSRLRKQAECDELAQRAEALKEENASLRSEVSRIRSEYEQLRSEN 369
                          89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077774.2E-30195IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165965.5E-54134274No hitNo description
Gene3DG3DSA:1.20.5.1701.7E-19301368No hitNo description
PfamPF001702.2E-20307369IPR004827Basic-leucine zipper domain
SMARTSM003381.2E-22307371IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.943309372IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.56E-11310367No hitNo description
CDDcd147021.00E-24312362No hitNo description
PROSITE patternPS000360314329IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 417 aa     Download sequence    Send to blast
MGSSDMDKTP KEESKTPPAT SQEQSSTTGM PTTNPDWSNF QTYSPIPPHG FLASSPQAHP  60
YMWGVQHIMP PYGTPPHPYV AMYPHGGIYA HPSIPPGSYP FSPFAMASPN GIADASGNAP  120
GSIEVGGKPP EMKEKLPIKR SKGSVSGGNL SMWITGKNNE PGKTPGESAN GIHSKSGESA  180
SDGTSEGSDE NSQNDSQLKS GEKQDSFEDE PSQNGSPVHA PQNGVHNRSQ TVVNQTMPIL  240
PISSTSASGA VPGPTTNLNI GMDYWGTPTS STIPALHGKV PSAAVAGGMI AAGSRDGVQP  300
QVWLQDEREL KRQRRKQSNR ESARRSRLRK QAECDELAQR AEALKEENAS LRSEVSRIRS  360
EYEQLRSENA ALKDRLGEIP GVTTPGKEDL RSGQNDQHVS NDTQQSGQTD VVHGVH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1323329RRSRLRK
2323330RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G095200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3697900.0AF369790.1 Phaseolus vulgaris bZIP transcription factor 2 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001345695.10.0bZIP transcription factor 93
RefseqXP_028207147.10.0bZIP transcription factor 16-like
SwissprotQ501B21e-153BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A0B2RWX10.0A0A0B2RWX1_GLYSO; BZIP transcription factor 16 isoform A
TrEMBLI1MMF50.0I1MMF5_SOYBN; Uncharacterized protein
STRINGGLYMA16G15810.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40173256
Representative plantOGRP7001767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.11e-155basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Liao Y, et al.
    Soybean GmbZIP44, GmbZIP62 and GmbZIP78 genes function as negative regulator of ABA signaling and confer salt and freezing tolerance in transgenic Arabidopsis.
    Planta, 2008. 228(2): p. 225-40
    [PMID:18365246]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]