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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G092100.1.p |
Common Name | GLYMA_16G092100 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB |
Protein Properties |
Length: 301aa MW: 34054.6 Da PI: 7.1136 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G092100.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 64.4 | 2.2e-20 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEde+l d++ ++G gtW+t +++ g++R++k+c++rw +yl
Glyma.16G092100.1.p 14 KGPWTPEEDEKLMDYISKHGRGTWRTLPKHAGLNRCGKSCRLRWENYL 61
79********************************************97 PP
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2 | Myb_DNA-binding | 56.4 | 7e-18 | 67 | 111 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
rg++T+eE++l+++++ G++ W++Ia +++ gRt++++k++w++
Glyma.16G092100.1.p 67 RGKFTEEEEQLIINLHSVIGNK-WAKIATHLP-GRTDNEIKNYWNTN 111
89********************.*********.***********986 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 301 aa
Download sequence Send
to blast |
MGRPPCCNES GVKKGPWTPE EDEKLMDYIS KHGRGTWRTL PKHAGLNRCG KSCRLRWENY 60 LRPDIKRGKF TEEEEQLIIN LHSVIGNKWA KIATHLPGRT DNEIKNYWNT NLRKKLLQMG 120 IDPETHKPRT DFNHLLNLSQ LLGLSNLGTS TSPWTNPLGL QADVTQIAKL QLLQNMLQLF 180 NGTSLVNIGN PYLLGNQILN PLDTFLNGTN ILPDKDSILR GLEYANPVEN QAENLLPALV 240 ASGPRSSTFN QMDFNYNAAR MSTQSPSTTF EAWEKFLIDD DESSGSYWKE ILDLTYPLSW 300 *
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Expression --
Description ? help
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Source |
Description |
Uniprot | DEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235268 | 0.0 | AC235268.1 Glycine max strain Williams 82 clone GM_WBb0044I02, complete sequence. |