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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G091800.1.p | ||||||||
Common Name | GLYMA_16G091800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 511aa MW: 56348.8 Da PI: 4.6762 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 116.1 | 2.2e-36 | 31 | 122 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k+ye++ed+++++++sws ++nsfvv+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k Glyma.16G091800.1.p 31 FLSKTYEMVEDPSTDSIVSWSPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 111 9********************999*****************************************999.........************* PP XXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkks 102 +ll++i r+k Glyma.16G091800.1.p 112 HLLKTITRRKP 122 ********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 2.8E-40 | 25 | 115 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SuperFamily | SSF46785 | 5.58E-37 | 26 | 120 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 4.0E-65 | 27 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-32 | 31 | 120 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.4E-20 | 31 | 54 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.4E-20 | 69 | 81 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 70 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.4E-20 | 82 | 94 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 511 aa Download sequence Send to blast |
MDGRASSSVG GEASPAPAPV PITNANAPPP FLSKTYEMVE DPSTDSIVSW SPTNNSFVVW 60 NPPEFARDLL PKHFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ KHLLKTITRR 120 KPAHGHNQQA QQAHGQSSSV GACVEVGKFG LEEEVEILKR DKNVLMQELV RLRQQQQATD 180 NQLQSMVQRL QGMEQRQQQM MSFLAKAVQS PGFLAQFVQQ QNESSRRITE ANKKRRLKQE 240 GIGEMEHTAA SDGQIVKYQP LINEAAKAML RQMMKLDTSR LESFSNNADN YLIGDHSSSS 300 GATDRGNSLS RTSGVTLQVV PLTTIQSSHI PSATGIGDDP STGKSEILST PQVVACDEVT 360 KAQYSNVNVS VGESNAPAIP VTQTDEIMRD LSTIPDIVAG NILDIPQENY MAPETGGEGY 420 MDPTSFGVNV SLPIDFDSIS PEADIDDLLN NPHFWDDILR TPVSEEIDTN DAEVFKENEV 480 QPMENGLDKS QNMDQLTEQM GLLSSDAKRI * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 3e-27 | 29 | 120 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-27 | 29 | 120 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-27 | 29 | 120 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-27 | 29 | 120 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 231 | 238 | NKKRRLKQ |
2 | 232 | 237 | KKRRLK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.12083 | 0.0 | cotyledon| root |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G091800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY458843 | 0.0 | AY458843.1 Glycine max heat shock factor protein hsf8-related mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001236740.2 | 0.0 | heat stress transcription factor 33 | ||||
Refseq | XP_028208075.1 | 0.0 | heat shock factor protein HSF8-like | ||||
Swissprot | Q40152 | 1e-176 | HSF8_SOLLC; Heat shock factor protein HSF8 | ||||
TrEMBL | A0A445GG78 | 0.0 | A0A445GG78_GLYSO; Heat shock factor protein HSF8 | ||||
TrEMBL | I1MMC1 | 0.0 | I1MMC1_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G13400.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1843 | 31 | 69 | Representative plant | OGRP96 | 17 | 233 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32330.1 | 1e-141 | heat shock transcription factor A1D |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G091800.1.p |
Publications ? help Back to Top | |||
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