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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G091800.1.p |
Common Name | GLYMA_16G091800 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
HSF |
Protein Properties |
Length: 511aa MW: 56348.8 Da PI: 4.6762 |
Description |
HSF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G091800.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | HSF_DNA-bind | 116.1 | 2.2e-36 | 31 | 122 | 2 | 102 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91
Fl+k+ye++ed+++++++sws ++nsfvv+++ efa+++Lpk+Fkh+nf+SFvRQLn+YgF+kv+ ++ weF+++ F +g+k
Glyma.16G091800.1.p 31 FLSKTYEMVEDPSTDSIVSWSPTNNSFVVWNPPEFARDLLPKHFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQK 111
9********************999*****************************************999.........************* PP
XXXXXXXXXXX CS
HSF_DNA-bind 92 ellekikrkks 102
+ll++i r+k
Glyma.16G091800.1.p 112 HLLKTITRRKP 122
********986 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009408 | Biological Process | response to heat |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 511 aa
Download sequence Send
to blast |
MDGRASSSVG GEASPAPAPV PITNANAPPP FLSKTYEMVE DPSTDSIVSW SPTNNSFVVW 60 NPPEFARDLL PKHFKHNNFS SFVRQLNTYG FRKVDPDRWE FANEGFLRGQ KHLLKTITRR 120 KPAHGHNQQA QQAHGQSSSV GACVEVGKFG LEEEVEILKR DKNVLMQELV RLRQQQQATD 180 NQLQSMVQRL QGMEQRQQQM MSFLAKAVQS PGFLAQFVQQ QNESSRRITE ANKKRRLKQE 240 GIGEMEHTAA SDGQIVKYQP LINEAAKAML RQMMKLDTSR LESFSNNADN YLIGDHSSSS 300 GATDRGNSLS RTSGVTLQVV PLTTIQSSHI PSATGIGDDP STGKSEILST PQVVACDEVT 360 KAQYSNVNVS VGESNAPAIP VTQTDEIMRD LSTIPDIVAG NILDIPQENY MAPETGGEGY 420 MDPTSFGVNV SLPIDFDSIS PEADIDDLLN NPHFWDDILR TPVSEEIDTN DAEVFKENEV 480 QPMENGLDKS QNMDQLTEQM GLLSSDAKRI *
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3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
2ldu_A | 3e-27 | 29 | 120 | 18 | 120 | Heat shock factor protein 1 |
5d5u_B | 3e-27 | 29 | 120 | 27 | 129 | Heat shock factor protein 1 |
5d5v_B | 3e-27 | 29 | 120 | 27 | 129 | Heat shock factor protein 1 |
5d5v_D | 3e-27 | 29 | 120 | 27 | 129 | Heat shock factor protein 1 |
Search in ModeBase |
Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 231 | 238 | NKKRRLKQ |
2 | 232 | 237 | KKRRLK |
Functional Description ? help
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Source |
Description |
UniProt | DNA-binding protein that specifically binds heat shock promoter elements (HSE) and activates transcription. {ECO:0000250}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AY458843 | 0.0 | AY458843.1 Glycine max heat shock factor protein hsf8-related mRNA, complete cds. |