PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G087300.1.p
Common NameGLYMA_16G087300, LOC100801233
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 590aa    MW: 64071.2 Da    PI: 6.6141
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G087300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH284e-09390437455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Glyma.16G087300.1.p 390 SHSLAERVRREKISERMKLLQDLVPGC----NKVTGKALMLDEIINYVQSLQ 437
                          8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.59E-17384455IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.61E-10384441No hitNo description
PROSITE profilePS5088815.663386436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-16386454IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.3E-6390437IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10392442IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MENQFFLASG VSQTQQHPLH FEPSPPNPSS VPSWQSLSPP NMGIQLTVMN CAPEQTQDCF  60
YNPNWDKSTA DHGLHHFDSS ALSSMVSSPA ASSNPNNKSN ENFIIRELVG KLGPIGSSDE  120
IPQHSPHPLV VASSCMNSNG NNSTYTSCYS TPLSSPPKVN IVHSLVNERL ANLGGGKSTM  180
ALNSSVAEFS ADPGFAERAA KFSCFGSRSF NDRSVQLGVN NAELAQRSAP AMEHGGKLPR  240
VSSSPLLKTL GSQMGAQENK NSAIHQEQEK MEGANSQEES TISEQAPNGE IGVKTSQDMM  300
NSRKRKASSK GKAKETSNSF NPTKGVEGSE DSNSKRSKPN EGDGNENGQV KVEEESKAEE  360
EKQNKSNSKP PEPPKDYIHV RARRGQATDS HSLAERVRRE KISERMKLLQ DLVPGCNKVT  420
GKALMLDEII NYVQSLQRQV EFLSMKLASV NTRMDLSIEN LISKDVFQSN NSLATLPNAV  480
FPLDSSAQTF YGHQPQQNNP VAHNNIPNRS VTHCSVDPLD TSLCQNLAMQ LPPLNVFNDG  540
GSQFPLAFLE DDLHTIVQMG FGQAANRKTP IQSPSFNGSN NVPQMKVEL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.365810.0root| stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00660PBMTransfer from Pp3c6_9520Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G087300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003547776.20.0transcription factor bHLH62
RefseqXP_028207605.10.0transcription factor bHLH62-like
TrEMBLA0A0B2QU380.0A0A0B2QU38_GLYSO; Transcription factor bHLH62
TrEMBLI1MM860.0I1MM86_SOYBN; Uncharacterized protein
STRINGGLYMA16G10620.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25303480
Representative plantOGRP5816313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.12e-99bHLH family protein