PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G079600.1.p
Common NameGLYMA_16G079600, LOC100779645
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 275aa    MW: 31013.8 Da    PI: 4.7244
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G079600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.97e-20108158256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkklege 56 
                          +++GVr+++ +grW+AeIrdp     r +r++lg+f+taeeAa  +++a+ k++g+
  Glyma.16G079600.1.p 108 KFRGVRQRP-WGRWAAEIRDPL----RrTRVWLGTFDTAEEAAMVYDKAAIKFRGA 158
                          89*******.**********73....45*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541719.15E-22108164IPR016177DNA-binding domain
SMARTSM003805.2E-37108171IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-30108165IPR001471AP2/ERF domain
PROSITE profilePS5103223.683108165IPR001471AP2/ERF domain
CDDcd000183.64E-35108164No hitNo description
PfamPF008473.9E-13108157IPR001471AP2/ERF domain
PRINTSPR003676.7E-11109120IPR001471AP2/ERF domain
PRINTSPR003676.7E-11131147IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MECARKTITT KFMKSSKFFP KVVRISVTDQ DATDSSSDEE AERVKVKKIV VNEIVCVNNN  60
KKRHNNDNSG CCYSTKDNES LKQQRQQSLV SLGEEGYMDS KQSLKQHKFR GVRQRPWGRW  120
AAEIRDPLRR TRVWLGTFDT AEEAAMVYDK AAIKFRGAEA VTNFIKPPLK DDAVSLEICE  180
SVVSGTSCAC DSPTSVLVFQ PWMEPPLLEE TFKEVFSGLT DGYDDGFLFS NDSLCDQPLP  240
TTFSNADCII PLDEDFESCK WVVDNYFSDD TSLQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-22105170265ATERF1
3gcc_A3e-22105170265ATERF1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G079600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548602.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLK7MFU30.0K7MFU3_SOYBN; Uncharacterized protein
STRINGGLYMA16G08683.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45034161
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.16e-35cytokinin response factor 4