PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G073000.1.p
Common NameGLYMA_16G073000, MYB181
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 209aa    MW: 24185.2 Da    PI: 7.1123
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G073000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.82.1e-171764148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+WT eEd++l+++++ +G g W++ a+  g++Rt+k+c++rw++yl
  Glyma.16G073000.1.p 17 KGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYL 64
                         79********************************************97 PP
2Myb_DNA-binding55.61.2e-1770113146
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                          rg+ T+eE++l+ ++++++G++ W++Ia++++ gRt++++k++w++
  Glyma.16G073000.1.p  70 RGNITPEEQLLIMELHAKWGNR-WSKIAKHLP-GRTDNEIKNYWRT 113
                          7999******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.1E-241067IPR009057Homeodomain-like
PROSITE profilePS5129417.2741264IPR017930Myb domain
SuperFamilySSF466891.11E-3014111IPR009057Homeodomain-like
SMARTSM007177.2E-131666IPR001005SANT/Myb domain
PfamPF002492.6E-161764IPR001005SANT/Myb domain
CDDcd001674.01E-101964No hitNo description
PROSITE profilePS5129425.85965119IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.7E-2568119IPR009057Homeodomain-like
SMARTSM007171.8E-1569117IPR001005SANT/Myb domain
PfamPF002491.6E-1670113IPR001005SANT/Myb domain
CDDcd001672.68E-1274113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDKKQLCNTS QDPEVRKGPW TMEEDLILIN YIANHGEGVW NSLAKAAGLK RTGKSCRLRW  60
LNYLRPDVRR GNITPEEQLL IMELHAKWGN RWSKIAKHLP GRTDNEIKNY WRTRIQKHIK  120
QAENFQQQIS NNSEINDHQA STSHVSTMAE PMETYSPPFY QGMLEPFSSI QFPTINPDQS  180
SCCTNDNNNS INYWSMEDIW SMQLLNGD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C5e-271211922128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.598030.0flower| meristem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: First detected in 15-20 mm buds. Expression increases as flowers develop. {ECO:0000269|PubMed:1840903}.
UniprotTISSUE SPECIFICITY: Expressed only in flowers. {ECO:0000269|PubMed:1840903}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G073000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0901840.0BT090184.1 Soybean clone JCVI-FLGm-3H24 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001235850.11e-157MYB transcription factor MYB181
RefseqXP_028206822.11e-157myb-related protein 305-like
SwissprotP813914e-91MYB05_ANTMA; Myb-related protein 305
TrEMBLA0A445GFK21e-155A0A445GFK2_GLYSO; Myb-related protein 305
TrEMBLQ0PJJ61e-155Q0PJJ6_SOYBN; MYB transcription factor MYB181
STRINGGLYMA16G07960.11e-156(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33053469
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G27810.15e-90myb domain protein 21
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]