PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G072700.1.p
Common NameGLYMA_16G072700, LOC100805329
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 428aa    MW: 49076 Da    PI: 9.6635
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G072700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding53.65.2e-17183229148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                          +g W++eEd  lv++v+++G + W+ Iar ++ gR +kqc++rw+++l
  Glyma.16G072700.1.p 183 KGQWSAEEDRVLVQLVERFGFKKWSHIARLLN-GRVGKQCRERWHNHL 229
                          799*****************************.*************97 PP
2Myb_DNA-binding55.21.6e-17235277145
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                          + +W +eEd +l++a+k+ G++ W+ Iar+m+ gRt++ +k++w+
  Glyma.16G072700.1.p 235 KESWNEEEDRILIEAHKEVGNR-WAEIARRMP-GRTENTIKNHWN 277
                          578*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.661178233IPR017930Myb domain
SuperFamilySSF466893.67E-31180276IPR009057Homeodomain-like
SMARTSM007173.7E-15182231IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.1E-27184236IPR009057Homeodomain-like
CDDcd001671.08E-13186229No hitNo description
PfamPF139212.3E-18186243No hitNo description
SMARTSM007179.7E-17234282IPR001005SANT/Myb domain
PROSITE profilePS5129420.689234284IPR017930Myb domain
CDDcd001675.49E-13237280No hitNo description
Gene3DG3DSA:1.10.10.601.2E-20237282IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MEFDPIFPAE KIHFLSGIFS GIKSEIPVIP MSQENNNNTI CMHQNNFNNH FQHLPLNEPN  60
HDHNHHHPTI TKIFTEGSNS SILTPLFCLS SSSGYSYRNE SLRGGFANNN NNYKHSIMPY  120
APNSTQNEPM HGPNRAIWDF SQKIPLQYSG AGASATSSQP HQQVQRRSNG KIHQHRNMGN  180
IIKGQWSAEE DRVLVQLVER FGFKKWSHIA RLLNGRVGKQ CRERWHNHLR PNIRKESWNE  240
EEDRILIEAH KEVGNRWAEI ARRMPGRTEN TIKNHWNATK RRLNAKRLRN KRRGLKGPTL  300
LESYIRQVTA NEETQKEMIK NSMSNMNLKG ESSSNTTTTN TNTNTNTRYP HLFRVWYESS  360
EGGFSSEEDE AGWSVQQPHG VGGGYVPMML NATVEDGTMG YDVAMEMAPE VQMKKEMDLM  420
EMIIRKA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-431812822103MYB PROTO-ONCOGENE PROTEIN
1h88_C9e-4318128256157MYB PROTO-ONCOGENE PROTEIN
1h89_C9e-4318128256157MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-431812822103C-Myb DNA-Binding Domain
1msf_C2e-431812822103C-Myb DNA-Binding Domain
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G072700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006599106.10.0myb-like protein A isoform X1
RefseqXP_028206905.10.0myb-like protein A isoform X1
TrEMBLK7MFP50.0K7MFP5_SOYBN; Uncharacterized protein
STRINGGLYMA16G07927.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15703196
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18770.12e-56myb domain protein 98