PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G056000.1.p
Common NameGLYMA_16G056000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 255aa    MW: 29050 Da    PI: 9.2607
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G056000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.40.0004997119223
                          EETTTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                          +C+ C+++++++ +L  H +  H
  Glyma.16G056000.1.p  97 SCSVCSRVYPTSWLLSIHVSEvH 119
                          6*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.446994IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807194IPR007087Zinc finger, C2H2
SMARTSM003552.896119IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028098119IPR007087Zinc finger, C2H2
SMARTSM003551.1134159IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280136159IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MAMEVEQNQN HQLGFPFWKP LRRRFGPESP FFAHGNLERE LLAKQLALEL TEEKQQLEKW  60
MQEEEGREVF CPIVGCGARL TSMEDFENHY NARHTASCSV CSRVYPTSWL LSIHVSEVHD  120
SFFQAKVARG YDMYECLVER CGLKFKSYNS RQQHLVDKHK FPTSFEFFKK AKPSKKHRLK  180
SQRKQAVCKE DSSGMMEVEN ASMDDLVSAV SKLNTSDSTP SSISFGRRHK GLSFVPRAVQ  240
RGGGSNSTAS VTKK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.225990.0cotyledon| leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G056000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0954190.0BT095419.1 Soybean clone JCVI-FLGm-14N2 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001242284.20.0uncharacterized protein LOC100819557
RefseqXP_028205379.10.0zinc finger protein 511
TrEMBLA0A0B2PLC90.0A0A0B2PLC9_GLYSO; Zinc finger protein 511
TrEMBLI1MLH20.0I1MLH2_SOYBN; Uncharacterized protein
STRINGGLYMA16G06040.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97182430
Representative plantOGRP75381313
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14140.11e-100zinc ion binding;nucleic acid binding;zinc ion binding