PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

WRKY

Protein Properties

Length: 196aa MW: 21519.8 Da PI: 9.2069

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G054400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	104.3	6.4e-33	116	174	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK vk+++fprsYYrCt++gC+vkk+v+r ++d+ vv++tYeg H+h+ Glyma.16G054400.1.p 116 LDDGYRWRKYGQKAVKNNKFPRSYYRCTHQGCNVKKQVQRLTKDEGVVVTTYEGVHTHP 174 59********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	1.1E-33	101	174	IPR003657	WRKY domain
SuperFamily	SSF118290	6.28E-30	108	175	IPR003657	WRKY domain
PROSITE profile	PS50811	29.895	111	176	IPR003657	WRKY domain
SMART	SM00774	1.5E-39	116	175	IPR003657	WRKY domain
Pfam	PF03106	7.5E-27	117	174	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0000122	Biological Process	negative regulation of transcription from RNA polymerase II promoter
GO:0010055	Biological Process	atrichoblast differentiation
GO:0032107	Biological Process	regulation of response to nutrient levels
GO:0043620	Biological Process	regulation of DNA-templated transcription in response to stress
GO:0048527	Biological Process	lateral root development
GO:0005634	Cellular Component	nucleus
GO:0001046	Molecular Function	core promoter sequence-specific DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 196 aa Download sequence Send to blast
MENYSMLFPI SNSSSYPIST SGVGSSQIGY NGQSSNAFLG LRPSNELLGS DDHDNGGEGG 60 GDGDGNMLMS QISGGSNTNV SDELGGSGNS NNKKKGEKKV KKPRYAFQTR SQVDILDDGY 120 RWRKYGQKAV KNNKFPRSYY RCTHQGCNVK KQVQRLTKDE GVVVTTYEGV HTHPIEKTTD 180 NFEHILSQMK IYTPF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	3e-27	107	173	8	74	Probable WRKY transcription factor 4
2lex_A	3e-27	107	173	8	74	Probable WRKY transcription factor 4
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.53222	0.0	leaf

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00506	DAP	Transfer from AT5G13080	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G054400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT098641	0.0	BT098641.1 Soybean clone JCVI-FLGm-12D20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003549123.1	1e-144	probable WRKY transcription factor 75
Refseq	XP_028206193.1	1e-144	probable WRKY transcription factor 75
TrEMBL	A0A368UGZ1	1e-142	A0A368UGZ1_SOYBN; Uncharacterized protein
TrEMBL	A0A445GER8	1e-142	A0A445GER8_GLYSO; Putative WRKY transcription factor 75
STRING	GLYMA16G05880.1	1e-143	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1156	34	110
Representative plant	OGRP14	17	875

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13080.1	2e-58	WRKY DNA-binding protein 75

Link Out ? help Back to Top
Phytozome	Glyma.16G054400.1.p
Entrez Gene	100788382