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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G053900.1.p |
Common Name | GLYMA_16G053900, LOC100778951 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
TCP |
Protein Properties |
Length: 346aa MW: 36798.6 Da PI: 9.5511 |
Description |
TCP family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G053900.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | TCP | 126.7 | 2.4e-39 | 66 | 157 | 2 | 98 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssgkaa 91
a+k+++++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti+WLlqqa+p+i+++tgt++++as+ a+ +s s ++ s +++
Glyma.16G053900.1.p 66 APKRSSNKDRHTKVEGRGRRIRMPALCAARIFQLTRELGHKSDGETIQWLLQQAEPSIIAATGTGTIPASALAAAGNSLSPQAASLSSS- 154
789******************************************************************77744444444442222211. PP
TCP 92 ksaaksk 98
++
Glyma.16G053900.1.p 155 ----LHQ 157
....111 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MDPKGSKQQP QQSQEVVPNF LSLPQQQQGN TNNNNMGENK PAEVKDFQIV VAENKEESKK 60 QQQQLAPKRS SNKDRHTKVE GRGRRIRMPA LCAARIFQLT RELGHKSDGE TIQWLLQQAE 120 PSIIAATGTG TIPASALAAA GNSLSPQAAS LSSSLHQHQQ KIDELGGSGG SSSRASWQMV 180 GGNLGRPHLG VGVATAAGLW PPHVSGFGFQ TPPTTTTPTT TTSSSGPSNA TLATESSNYL 240 QKIAFPGFDL PTSATNMMGH MSFTSILGGG GGGGAQHMPG LELGLSQDGH IGVLNQQALN 300 QIYQQMNQAG RVHHHQHQHH HQHHQQQQHH QQTPAKDDSQ GSGGQ*
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Expression -- UniGene
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UniGene ID |
E-value |
Expressed in |
Gma.23044 | 0.0 | cotyledon| hypocotyl| leaf| root| seed coat| stem |
Functional Description ? help
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Source |
Description |
UniProt | Transcription factor that binds to the site II motif (3'-TGGGCC/T-5') in the promoter of PCNA-2 and to 3'-GCCCG/A-5' elements in the promoters of cyclin CYCB1-1 and ribosomal protein genes. {ECO:0000269|PubMed:12631321, ECO:0000269|PubMed:16123132}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AC235044 | 0.0 | AC235044.1 Glycine max strain Williams 82 clone GM_WBb0005G15, complete sequence. |
GenBank | AC235265 | 0.0 | AC235265.1 Glycine max strain Williams 82 clone GM_WBb0041K04, complete sequence. |
GenBank | AC236296 | 0.0 | AC236296.1 Glycine max strain Williams 82 clone GM_WBb0094F23, complete sequence. |
Publications
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- Zhu P, et al.
Arabidopsis small nucleolar RNA monitors the efficient pre-rRNA processing during ribosome biogenesis. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(42): p. 11967-11972 [PMID:27708161] - Wu JF, et al.
LWD-TCP complex activates the morning gene CCA1 in Arabidopsis. Nat Commun, 2016. 7: p. 13181 [PMID:27734958] - Guan P, et al.
Interacting TCP and NLP transcription factors control plant responses to nitrate availability. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(9): p. 2419-2424 [PMID:28202720] - Guan P
Dancing with Hormones: A Current Perspective of Nitrate Signaling and Regulation in Arabidopsis. Front Plant Sci, 2017. 8: p. 1697 [PMID:29033968] - Zhang N, et al.
MOS1 functions closely with TCP transcription factors to modulate immunity and cell cycle in Arabidopsis. Plant J., 2018. 93(1): p. 66-78 [PMID:29086441] - Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development. Plant Physiol., 2018. 176(2): p. 1694-1708 [PMID:29133375] - Konishi N,Okubo T,Yamaya T,Hayakawa T,Minamisawa K
Nitrate Supply-Dependent Shifts in Communities of Root-Associated Bacteria in Arabidopsis. Microbes Environ., 2017. 32(4): p. 314-323 [PMID:29187692]
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