PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G053000.1.p
Common NameGLYMA_16G053000
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family GRAS
Protein Properties Length: 687aa    MW: 76146.5 Da    PI: 6.0778
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G053000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS436.32.2e-1333246851374
                 GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                          lv+lLl+cAeav++++  la+++L +l+  ++p gd+mqR+aa+ft  L+ rl++ + +   + p+++ +++ns e+l+++++ ++++P+
  Glyma.16G053000.1.p 324 LVHLLLACAEAVAKEEYMLARRYLHHLNRVVTPLGDSMQRVAACFTDSLSVRLNS-TLTPKPTTPSKPLTPSNSLEVLKIYQIVYQACPY 412
                          68****************************************************9.44444566888899999***************** PP

                 GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnv 180
                          +kf+h+taNqaI ea+e+eervH+iD+di qG QWpa++qaLa+Rp+g+p lRiTgvg+    s ++++etg+ L+++A++l++pfef++
  Glyma.16G053000.1.p 413 VKFAHFTANQAIFEAFETEERVHVIDLDILQGYQWPAFMQALAARPAGAPFLRITGVGP----SIDTVRETGRCLTELAHSLRIPFEFHA 498
                          ***********************************************************....9************************** PP

                 GRAS 181 lvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270
                           v ++ledl++++L+ + gEalaVn v +lhr++       ++  ++L ++++  P +v++veqea+hn++ Fl rfleal+yysa+fds
  Glyma.16G053000.1.p 499 -VGEQLEDLKPHMLNRRVGEALAVNAVNRLHRVP------GNHLGNLLTMLRDQAPSIVTLVEQEASHNGPYFLGRFLEALHYYSAIFDS 581
                          .7*******************************9......444557******************************************** PP

                 GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvl 360
                          l+a++p+es +r+kvE+ ++++ei+n+vaceg er+erhe+lekWr+++e  GFk v ls +a++q k ll  ++ +gyr+ e++g+l+l
  Glyma.16G053000.1.p 582 LDATFPAESAQRAKVEQYIFAPEIRNIVACEGPERFERHERLEKWRKMMEGKGFKGVVLSPNAVTQSKILLGLYSCEGYRLTEDKGCLLL 671
                          ****************************************************************************************** PP

                 GRAS 361 gWkdrpLvsvSaWr 374
                          gW+dr++v++SaWr
  Glyma.16G053000.1.p 672 GWQDRAIVAASAWR 685
                          *************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.257298665IPR005202Transcription factor GRAS
PfamPF035147.5E-131324685IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MNSLCGSSVS LKSENNNSRT KVQQPTTPSN DSVMQSKKNN ATQSSGDLDQ TSLTPPSLNL  60
PSLKFDLDGD VEVQSPDSSM WESFFADHNL DGDFMISSPV RTPQASSYNC NYNYAQGMQG  120
QSLSGCSPPR FSSSQIGAFN SNKGKGLSPL HRVFNSPNNQ YMQHVENLSL PAIEFLEDYQ  180
LGYSSSTTNK MCCSDHNNIA SSSECFDLSM SHQIPSSMLD GLALHNSSSR YHRGSVVVDE  240
ESSVHGGGAG GFSQLSEESD IYHQMGSMAS ASLSQALQQE HYQEKQQAQQ LQQQQQQQQQ  300
HQQENLMVPI PIGVEQEQDS GLQLVHLLLA CAEAVAKEEY MLARRYLHHL NRVVTPLGDS  360
MQRVAACFTD SLSVRLNSTL TPKPTTPSKP LTPSNSLEVL KIYQIVYQAC PYVKFAHFTA  420
NQAIFEAFET EERVHVIDLD ILQGYQWPAF MQALAARPAG APFLRITGVG PSIDTVRETG  480
RCLTELAHSL RIPFEFHAVG EQLEDLKPHM LNRRVGEALA VNAVNRLHRV PGNHLGNLLT  540
MLRDQAPSIV TLVEQEASHN GPYFLGRFLE ALHYYSAIFD SLDATFPAES AQRAKVEQYI  600
FAPEIRNIVA CEGPERFERH ERLEKWRKMM EGKGFKGVVL SPNAVTQSKI LLGLYSCEGY  660
RLTEDKGCLL LGWQDRAIVA ASAWRC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-10033168425377Protein SCARECROW
5b3h_D1e-10033168425377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that functions in mycorrhizal specific signaling (PubMed:23122845). Required for Myc factor signaling from mycorrhizal fungi, but has no function in Nod factor signaling from rhizobial bacteria (PubMed:23122845). Regulates the expression of RAM2, a glycerol-3-phosphate acyl transferase that promotes cutin biosynthesis to enhance mycorrhizal hyphopodia formation (PubMed:23122845). {ECO:0000269|PubMed:23122845}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G053000.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced in roots during colonization by arbuscular mycorrhizal fungi. {ECO:0000269|PubMed:23122845}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358640.0AC235864.2 Glycine max clone GM_WBb0106P01, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003549053.10.0DELLA protein RGL1
SwissprotG7L1660.0RAM1_MEDTR; GRAS family protein RAM1
TrEMBLA0A0R0FYG50.0A0A0R0FYG5_SOYBN; Uncharacterized protein
STRINGGLYMA16G05751.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF94703243
Representative plantOGRP53661322
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66350.14e-97RGA-like 1
Publications ? help Back to Top
  1. Tang H, et al.
    An improved genome release (version Mt4.0) for the model legume Medicago truncatula.
    BMC Genomics, 2014. 15: p. 312
    [PMID:24767513]
  2. Pecrix Y, et al.
    Whole-genome landscape of Medicago truncatula symbiotic genes.
    Nat Plants, 2018. 4(12): p. 1017-1025
    [PMID:30397259]