PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G050900.2.p | ||||||||
Common Name | GLYMA_16G050900 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | DBB | ||||||||
Protein Properties | Length: 281aa MW: 31499.6 Da PI: 5.1488 | ||||||||
Description | DBB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 21.7 | 4.2e-07 | 3 | 33 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35 C+ +++k+++lfC+ ++ lC C ++ H Glyma.16G050900.2.p 3 PCDYCHSKPAILFCRPDSAKLCLLCDQHVHA 33 7**************************9995 PP | |||||||
2 | zf-B_box | 18.7 | 3.7e-06 | 45 | 84 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38 ++C+ ++ + l C +++ lC+ C +e+H g H+ Glyma.16G050900.2.p 45 QICDSCKTDTAVLRCSTDNLVLCHHCDVETH-GaaasshHQ 84 69******99********************8.447777643 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.527 | 1 | 46 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 5.6E-9 | 1 | 46 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.94E-6 | 3 | 34 | No hit | No description |
Pfam | PF00643 | 2.7E-5 | 3 | 41 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 9.343 | 42 | 88 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 3.35E-4 | 46 | 87 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 281 aa Download sequence Send to blast |
MLPCDYCHSK PAILFCRPDS AKLCLLCDQH VHAANALSLK HVRFQICDSC KTDTAVLRCS 60 TDNLVLCHHC DVETHGAAAS SHHQRHRLHG LSGCPSVTEI VSALCLDFRA QDPVVPTAAS 120 GGRDEVYEQV LEIARQRNDD LGAEQLKFDE SPINDVVVVD EMLMQQTPFT SLLMLPNSES 180 EFDSRKSNDN NGYGTEAGDL LWNYNPAYQP PQVWDFQLQK SRDCHEPRVV TFDGLEVPKL 240 FQDEHNMKYS TIGDDIDILS RNLHPYHLKA EDAIMLLILK * |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.21714 | 0.0 | cotyledon| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G050900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | HM068897 | 0.0 | HM068897.1 Glycine max CONSTANS-like zinc finger protein (COL16) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548956.1 | 0.0 | zinc finger protein CONSTANS-LIKE 15 | ||||
TrEMBL | A0A0R0FUL9 | 0.0 | A0A0R0FUL9_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G05540.1 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33500.2 | 3e-39 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G050900.2.p |