 |
Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
Glyma.16G050900.1.p |
| Common Name | COL16, GLYMA_16G050900 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
CO-like |
| Protein Properties |
Length: 382aa MW: 42877.1 Da PI: 6.9332 |
| Description |
CO-like family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.16G050900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-B_box | 20.6 | 9.5e-07 | 3 | 33 | 5 | 35 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHk 35
C+ +++k+++lfC+ ++ lC C ++ H
Glyma.16G050900.1.p 3 PCDYCHSKPAILFCRPDSAKLCLLCDQHVHA 33
7**************************9995 PP
|
| 2 | zf-B_box | 18.6 | 3.9e-06 | 45 | 84 | 4 | 38 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
++C+ ++ + l C +++ lC+ C +e+H g H+
Glyma.16G050900.1.p 45 QICDSCKTDTAVLRCSTDNLVLCHHCDVETH-GaaasshHQ 84
69******99********************8.447777643 PP
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| 3 | CCT | 64.7 | 2.7e-22 | 334 | 377 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44
R a+lRYkeK+ktR+++K+irYesRKa+A++R+Rv+GrFvk++
Glyma.16G050900.1.p 334 RGDAMLRYKEKKKTRRYDKHIRYESRKARADTRKRVRGRFVKAS 377
6789**************************************87 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 382 aa
Download sequence Send
to blast |
MLPCDYCHSK PAILFCRPDS AKLCLLCDQH VHAANALSLK HVRFQICDSC KTDTAVLRCS 60
TDNLVLCHHC DVETHGAAAS SHHQRHRLHG LSGCPSVTEI VSALCLDFRA QDPVVPTAAS 120
GGRDEVYEQV LEIARQRNDD LGAEQLKFDE SPINDVVVVD EMLMQQTPFT SLLMLPNSES 180
EFDSRKSNDN NGYGTEAGDL LWNYNPAYQP PQVWDFQLQK SRDCHEPRVV TFDGLEVPKL 240
FQDEHNMKYS TIGDDIDILS RNNQSDQSSS SHAKKKEENN KKAKGGLSSE SKLFESIPYN 300
GTNNVVVMEH LVGGNENVGT LTARVSLEEL AKNRGDAMLR YKEKKKTRRY DKHIRYESRK 360
ARADTRKRVR GRFVKASDVQ A*
|
| Annotation --
Nucleotide ? help
Back to Top |
| Source |
Hit ID |
E-value |
Description |
| GenBank | HM068897 | 0.0 | HM068897.1 Glycine max CONSTANS-like zinc finger protein (COL16) mRNA, complete cds. |
| Best hit in Arabidopsis thaliana ? help
Back to Top |
| Hit ID |
E-value |
Description |
| AT2G33500.1 | 6e-63 | B-box type zinc finger protein with CCT domain |
