![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Glyma.16G047600.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 261aa MW: 28715.4 Da PI: 6.6456 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 64.8 | 1.7e-20 | 48 | 97 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+W+AeIrdp+ + +r++lg+f+tae Aa+a++aa++k++g Glyma.16G047600.1.p 48 HYRGVRQRP-WGKWAAEIRDPK----KaARVWLGTFDTAEAAAAAYDAAALKFKG 97 7********.**********94....45************************987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 6.4E-33 | 47 | 106 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.09E-22 | 48 | 106 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 2.36E-22 | 48 | 107 | No hit | No description |
Pfam | PF00847 | 1.1E-13 | 48 | 97 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.264 | 48 | 105 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.4E-37 | 48 | 111 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 49 | 60 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.4E-11 | 71 | 87 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 261 aa Download sequence Send to blast |
MHPINTGDDS TLSSPIPQYG QISNSCLIET QDPSLQPLNQ GGNGRKRHYR GVRQRPWGKW 60 AAEIRDPKKA ARVWLGTFDT AEAAAAAYDA AALKFKGSKA KLNFPEHVLL PPPPISSSSP 120 PCNNNNNHHS YYYGSSALAP LAPPPQHVYD QTPPPQQQPL LSSSAQEEGF PNLMQYAQLL 180 WSRDDDDLQR IASGLHQHHH HNEAFYDSSS STLFSSTSTT YSMTVSDQQQ NIGDDTSTPK 240 GAEYNYGGCF FRGSDFHDKN * |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-25 | 47 | 108 | 1 | 63 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Gma.37220 | 0.0 | root |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Glyma.16G047600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT093140 | 1e-159 | BT093140.1 Soybean clone JCVI-FLGm-22C2 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003548854.1 | 0.0 | ethylene-responsive transcription factor ERF113 | ||||
TrEMBL | I1ML94 | 0.0 | I1ML94_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G05190.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF985 | 34 | 115 |
Representative plant | OGRP6 | 16 | 1718 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G61890.1 | 4e-31 | ERF family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Glyma.16G047600.1.p |