PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 236aa MW: 25920.1 Da PI: 5.2749

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G046300.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	58.8	1.3e-18	34	83	2	55
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y GVr+++ +gr++AeIrdps+ + r++lg+f+ta+eAa a+++a+++++g Glyma.16G046300.1.p 34 RYLGVRRRP-WGRYAAEIRDPST---KERHWLGTFDTADEAALAYDRAARAMRG 83 588****.******965...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	9.81E-21	34	91	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.4E-28	34	90	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	20.837	34	91	IPR001471	AP2/ERF domain
SMART	SM00380	7.3E-32	34	97	IPR001471	AP2/ERF domain
CDD	cd00018	8.34E-30	34	90	No hit	No description
PRINTS	PR00367	2.1E-8	35	46	IPR001471	AP2/ERF domain
Pfam	PF00847	8.6E-12	35	83	IPR001471	AP2/ERF domain
PRINTS	PR00367	2.1E-8	57	73	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 236 aa Download sequence Send to blast
MNPRTTSSSK AKKKQTTTTQ ESPHQRASSS WGGRYLGVRR RPWGRYAAEI RDPSTKERHW 60 LGTFDTADEA ALAYDRAARA MRGSRARTNF VYADTTPGSS VTPIISPDQP QPDPVLSFDP 120 FSLLAFPSGS YSASVAASQF SQQQQQPDNN NNNNIINNSN NNKDSTIELP PLPPDITSSV 180 GYEGFYNNDG GYYWEEDDNY LHNPMFSTMP AVSDNVAAAA GSSQVFDFGN SSFFF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gcc_A	3e-19	35	90	3	59	ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A	3e-19	32	90	3	62	ATERF1
3gcc_A	3e-19	32	90	3	62	ATERF1
5wx9_A	8e-19	33	90	13	71	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in germinating seeds. Present in young shoots, at low levels, especially in leaf primordia and developing leaf blades. Also detected in vascular tissue, mostly in xylem, of young leaves, petioles and hypocotyls. {ECO:0000269\|PubMed:11044410, ECO:0000269\|PubMed:12472696, ECO:0000269\|PubMed:16339853}.

Functional Description ? help Back to Top
Source	Description
UniProt	Cell division-promoting factor involved in leaf blade differentiation, inflorescence branching, as well as in carpel and silique shape. Promotes the number of xylem cells. Regulates positively the gibberellin signaling pathway leading to germination, hypocotyl elongation, and leaf expansion. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269\|PubMed:11044410, ECO:0000269\|PubMed:12472696, ECO:0000269\|PubMed:16339853}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G046300.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By imbibition. {ECO:0000269\|PubMed:16339853}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AP015037	4e-88	AP015037.1 Vigna angularis var. angularis DNA, chromosome 4, almost complete sequence, cultivar: Shumari.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_014624311.1	1e-173	ethylene-responsive transcription factor LEP
Swissprot	Q9M644	3e-49	LEP_ARATH; Ethylene-responsive transcription factor LEP
TrEMBL	A0A445GED3	1e-172	A0A445GED3_GLYSO; Ethylene-responsive transcription factor LEP
TrEMBL	K7MF75	1e-172	K7MF75_SOYBN; Uncharacterized protein
STRING	GLYMA16G05070.2	1e-173	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3904	31	61
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G13910.1	3e-23	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.16G046300.1.p
Entrez Gene	100792421

Publications ? help Back to Top
van der Graaff E,Nussbaumer C,Keller B The Arabidopsis thaliana rlp mutations revert the ectopic leaf blade formation conferred by activation tagging of the LEP gene. Mol. Genet. Genomics, 2003. 270(3): p. 243-52 [PMID:12910411] Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Chandler JW Class VIIIb APETALA2 Ethylene Response Factors in Plant Development. Trends Plant Sci., 2018. 23(2): p. 151-162 [PMID:29074232]