PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G043200.1.p
Common NameGLYMA_16G043200
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 354aa    MW: 39812.1 Da    PI: 9.1141
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G043200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM172.99.4e-5481381128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                          lppGfrFhPtdeel+ +yL kkv++ +l++ ++i+evdiyk++PwdLp+k++ +ekewyfFs+rd+ky++g r+nra++sgyWkatg+dk
  Glyma.16G043200.1.p   8 LPPGFRFHPTDEELILHYLSKKVASIPLTV-SIIAEVDIYKLDPWDLPAKATFGEKEWYFFSPRDRKYPNGARPNRAAASGYWKATGTDK 96 
                          79**************************99.89***************988899************************************ PP

                  NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          +++++     +e vg+kk Lvfykgr pkg+kt+W+mheyrl
  Glyma.16G043200.1.p  97 TIVTSlqggAQESVGVKKALVFYKGRPPKGVKTNWIMHEYRL 138
                          ****999877788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-645165IPR003441NAC domain
PROSITE profilePS5100562.3038165IPR003441NAC domain
PfamPF023651.3E-279138IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGSPESNLPP GFRFHPTDEE LILHYLSKKV ASIPLTVSII AEVDIYKLDP WDLPAKATFG  60
EKEWYFFSPR DRKYPNGARP NRAAASGYWK ATGTDKTIVT SLQGGAQESV GVKKALVFYK  120
GRPPKGVKTN WIMHEYRLVD NNKPIKLKDS SMRLDDWVLC RIYKKSKHAL TSTEASIGVG  180
EVDQAEEHLF QETLLPISKS PAPPPQNTLI SQKSVSFSNL LDAMDYSILS SFLSENHTNH  240
PPGVGSSAGF NTGNLDQQCS PINNNNPTNN YMFQKNPQLN PSVSNMENMM RPKRQVSNMD  300
EETLYPSKKY LSSSCNFPTN ISNQYENPQW NYLMKQSLMN QRLMLGPHLQ FQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-74716916169NO APICAL MERISTEM PROTEIN
1ut4_B1e-74716916169NO APICAL MERISTEM PROTEIN
1ut7_A1e-74716916169NO APICAL MERISTEM PROTEIN
1ut7_B1e-74716916169NO APICAL MERISTEM PROTEIN
3swm_A2e-74716919172NAC domain-containing protein 19
3swm_B2e-74716919172NAC domain-containing protein 19
3swm_C2e-74716919172NAC domain-containing protein 19
3swm_D2e-74716919172NAC domain-containing protein 19
3swp_A2e-74716919172NAC domain-containing protein 19
3swp_B2e-74716919172NAC domain-containing protein 19
3swp_C2e-74716919172NAC domain-containing protein 19
3swp_D2e-74716919172NAC domain-containing protein 19
4dul_A1e-74716916169NAC domain-containing protein 19
4dul_B1e-74716916169NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.110650.0cotyledon| flower| hypocotyl| leaf| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds to the promoter of ACO5, an ACC oxidase involved in ethylene biosynthesis. Mediates waterlogging-induced hyponastic leaf movement, and cell expansion in abaxial cells of the basal petiole region, by directly regulating the expression of ACO5 (PubMed:24363315). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000269|PubMed:24363315}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00333DAPTransfer from AT3G04070Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G043200.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By root flooding (PubMed:24363315). Induced by senescence (PubMed:24659488). {ECO:0000269|PubMed:24363315, ECO:0000269|PubMed:24659488}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF6573080.0KF657308.1 Glycine max NAC transcription factor (SNAC62) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028206784.10.0NAC transcription factor 47-like
SwissprotQ84TD61e-109NAC47_ARATH; NAC transcription factor 47
TrEMBLA0A445GE580.0A0A445GE58_GLYSO; NAC transcription factor 47
TrEMBLI1ML430.0I1ML43_SOYBN; Uncharacterized protein
STRINGGLYMA16G04740.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF66212750
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04070.11e-110NAC domain containing protein 47
Publications ? help Back to Top
  1. Hofmann NR
    A NAC transcription factor for flooding: SHYG helps plants keep their leaves in the air.
    Plant Cell, 2013. 25(12): p. 4771
    [PMID:24363314]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]