PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G032600.1.p
Common NameGLYMA_16G032600, LOC778090
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 333aa    MW: 36787.6 Da    PI: 9.3817
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G032600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding42.41.6e-1359103147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          r +WT++E++++++a +++  + Wk+I + +g  +t  q++s+ qky
  Glyma.16G032600.1.p  59 RESWTEQEHDKFLEALQLFDRD-WKKIEAFVG-SKTVIQIRSHAQKY 103
                          789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-1653109IPR009057Homeodomain-like
PROSITE profilePS5129415.40854108IPR017930Myb domain
TIGRFAMsTIGR015571.5E-1857106IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.1E-657109IPR009057Homeodomain-like
SMARTSM007175.3E-1158106IPR001005SANT/Myb domain
PfamPF002492.8E-1159103IPR001005SANT/Myb domain
CDDcd001672.06E-861104No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009737Biological Processresponse to abscisic acid
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MVSVNPNPAQ GFYFFDPSNM TLPGVNNLPP PPPPAPAAPS AVEDPNKKIR KPYTITKSRE  60
SWTEQEHDKF LEALQLFDRD WKKIEAFVGS KTVIQIRSHA QKYFLKVQKN GTSEHVPPPR  120
PKRKAARPYP QKAPKTPTVS QVMGPLQSSS AFIEPAYIYS PDSSSVLGTP VTNMPLSSWN  180
YNTTPQPGNV PQVTRDDMGL TGAGQAAPLN CCYSSSNEST PPTWPRSKRI NQGDQGKPIK  240
VMPDFAQVYS FIGSVFDPNS TNHLQKLQQM DPINVETVLL LMTNLSVNLM SPEFEDHKRL  300
LSSYDTDSDK SKFVNICSKS FTNKSESAVL SA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.139660.0cotyledon| hypocotyl| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00423DAPTransfer from AT4G01280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G032600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548642.10.0protein REVEILLE 5 isoform X1
SwissprotC0SVG51e-109RVE5_ARATH; Protein REVEILLE 5
TrEMBLI1MKS30.0I1MKS3_SOYBN; Uncharacterized protein
STRINGGLYMA16G03640.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11193396
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01280.25e-95MYB_related family protein
Publications ? help Back to Top
  1. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]