PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G023900.1.p
Common NameGLYMA_16G023900, LOC100804434
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 619aa    MW: 68575.6 Da    PI: 6.3937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G023900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72.1e-13451497455
                          HHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +h e+Er+RR+++N++f  Lr ++P+ +      K++Ka+ L  A+ YI++Lq
  Glyma.16G023900.1.p 451 NHVEAERQRREKLNQRFYALRAVVPNiS------KMDKASLLGDAIAYINQLQ 497
                          799***********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142159.6E-5351235IPR025610Transcription factor MYC/MYB N-terminal
SuperFamilySSF474592.88E-18446511IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.028447496IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.76E-15450501No hitNo description
Gene3DG3DSA:4.10.280.109.7E-18451509IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000106.8E-11451497IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.0E-17453502IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 619 aa     Download sequence    Send to blast
MKIEVGLGGV WNEDEKATVV EVLGREAFDY LVANSVSNEN LLMAFGSGEN LQNKLSGLVE  60
RPNASNFSWN YAIYWQISQS KYGDWILGWG DGCCREPRDG EEGGEVRIVD DEKVQRMRKR  120
VLQKLHMTFG GSDEDIYAFG LDRVTDTEMF FLVSMYFSFP RGLGGPGKCF ASGKHLWISD  180
MFKSGFDYCV RSFLAKSAGI QTVVLVPTDL GVVEMGSVRT VDESFELLQA VKSVFSAPLV  240
LPKVKPTAPL DLVSEKRDGN ESANALFCGL AIVDKNKNNN SHSNNRVEGV GVPKIFGQDL  300
NCSTQFREKL AVRKMEERPW PWGGHPPNGN SIGFPNGVHG SSWGAGEVVR QLGHPEILAP  360
RLASSGALPD VANSAKNDFV HNNFQQQQLP VQMQFDFSRA TSRASERSII AESEISDIKA  420
SCKEERMSIA DDRRPRKRGR KPANGREEPL NHVEAERQRR EKLNQRFYAL RAVVPNISKM  480
DKASLLGDAI AYINQLQAKL KTMEFERERF GSTCVDGPVL DVNAEVEKNH HNGAPDMDVQ  540
AAQDGVIVKV SCPIDVHPVS KVIQTFKEAE IGVVESRLTV ANDTVFHTFV VKSEGPDQVT  600
KDKLIALFSK ESNFIQTL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A8e-29445507264Transcription factor MYC2
5gnj_B8e-29445507264Transcription factor MYC2
5gnj_E8e-29445507264Transcription factor MYC2
5gnj_F8e-29445507264Transcription factor MYC2
5gnj_G8e-29445507264Transcription factor MYC2
5gnj_I8e-29445507264Transcription factor MYC2
5gnj_M8e-29445507264Transcription factor MYC2
5gnj_N8e-29445507264Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1432440RRPRKRGRK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that negatively regulates jasmonate (JA) signaling (PubMed:30610166). Negatively regulates JA-dependent response to wounding, JA-induced expression of defense genes, JA-dependent responses against herbivorous insects, and JA-dependent resistance against Botrytis cinerea infection (PubMed:30610166). Plays a positive role in resistance against the bacterial pathogen Pseudomonas syringae pv tomato DC3000 (PubMed:30610166). {ECO:0000269|PubMed:30610166}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G023900.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding, feeding with herbivorous insects, infection with the fungal pathogen Botrytis cinerea and infection with the bacterial pathogen Pseudomonas syringae pv tomato DC3000. {ECO:0000269|PubMed:30610166}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624758.10.0transcription factor bHLH13
RefseqXP_028205646.10.0transcription factor bHLH13-like
SwissprotA0A3Q7ELQ20.0MTB1_SOLLC; Transcription factor MTB1
TrEMBLA0A445GD830.0A0A445GD83_GLYSO; Transcription factor bHLH13
TrEMBLI1MKI10.0I1MKI1_SOYBN; Uncharacterized protein
STRINGGLYMA16G02690.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54483254
Representative plantOGRP25311123
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01260.31e-113bHLH family protein
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Sun H,Fan HJ,Ling HQ
    Genome-wide identification and characterization of the bHLH gene family in tomato.
    BMC Genomics, 2015. 16: p. 9
    [PMID:25612924]
  3. Liu Y, et al.
    MYC2 Regulates the Termination of Jasmonate Signaling via an Autoregulatory Negative Feedback Loop.
    Plant Cell, 2019. 31(1): p. 106-127
    [PMID:30610166]