PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G023800.1.p
Common NameGLYMA_16G023800, LOC100802845
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 195aa    MW: 21280.9 Da    PI: 6.6709
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G023800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.71.3e-173786255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ++GVr ++ +g+Wv+eIr+p++   + r++lg+f  +e+Aaka++ a+ +l+g
  Glyma.16G023800.1.p 37 LFRGVRKRR-WGKWVSEIREPRK---KSRIWLGSFPAPEMAAKAYDVAAYCLKG 86
                         69****887.**********843...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000185.85E-303695No hitNo description
PfamPF008471.9E-113686IPR001471AP2/ERF domain
SuperFamilySSF541719.15E-213796IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.0E-303795IPR001471AP2/ERF domain
SMARTSM003802.4E-3537100IPR001471AP2/ERF domain
PROSITE profilePS5103223.1823794IPR001471AP2/ERF domain
PRINTSPR003673.5E-123849IPR001471AP2/ERF domain
PRINTSPR003673.5E-127696IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 195 aa     Download sequence    Send to blast
MEQELQRNSV HDDEAATTTS SGDKPATPRG GGTRHPLFRG VRKRRWGKWV SEIREPRKKS  60
RIWLGSFPAP EMAAKAYDVA AYCLKGRKAQ LNFPDEVHRL PLLPSACTAR DIQAAAAKAA  120
HMMIVQAASV TADSPEKSSS ITSDCGDGGG GDDFWGEIEL PELLNAKWWA SDHDVTPWPE  180
SELPPQQPFT TACL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-182998676Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.19540.0cotyledon| seed coat| stem
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G023800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150421e-120AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548354.11e-142ethylene-responsive transcription factor ERF023
RefseqXP_028206005.11e-142ethylene-responsive transcription factor ERF023-like
SwissprotQ1ECI23e-47ERF23_ARATH; Ethylene-responsive transcription factor ERF023
TrEMBLA0A0R4J5F51e-141A0A0R4J5F5_SOYBN; Uncharacterized protein
TrEMBLA0A445GD981e-141A0A445GD98_GLYSO; Ethylene-responsive transcription factor ERF023
STRINGGLYMA16G02680.11e-142(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63752847
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G01250.14e-42ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]