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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G023000.1.p | ||||||||
Common Name | GLYMA_16G023000, MYB92 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB | ||||||||
Protein Properties | Length: 294aa MW: 33217.2 Da PI: 8.2115 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 52.8 | 9.3e-17 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed ll ++++ +G g+Wk+ +++ g+ R++k+c++rw +yl Glyma.16G023000.1.p 14 KGPWTPKEDALLTKYIQAHGEGQWKSLPKKAGLLRCGKSCRLRWMNYL 61 79******************************99************97 PP | |||||||
2 | Myb_DNA-binding | 49 | 1.4e-15 | 67 | 112 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+ +eEd+l+++ + +lG++ W++Ia +++ gRt++++k++w+++l Glyma.16G023000.1.p 67 RGNIAPEEDDLIIRMHSLLGNR-WSLIAGRLP-GRTDNEIKNYWNTHL 112 566679****************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.536 | 9 | 61 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.14E-29 | 11 | 108 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 5.2E-13 | 13 | 63 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.3E-15 | 14 | 61 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.3E-24 | 15 | 68 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.83E-10 | 16 | 61 | No hit | No description |
PROSITE profile | PS51294 | 26.072 | 62 | 116 | IPR017930 | Myb domain |
SMART | SM00717 | 5.2E-15 | 66 | 114 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 5.2E-14 | 68 | 112 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.9E-26 | 69 | 116 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.67E-12 | 72 | 112 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence Send to blast |
MGRAPCCSKV GLHKGPWTPK EDALLTKYIQ AHGEGQWKSL PKKAGLLRCG KSCRLRWMNY 60 LRPDIKRGNI APEEDDLIIR MHSLLGNRWS LIAGRLPGRT DNEIKNYWNT HLSKKLKIQG 120 TEDTDTHKML ENPQEEAASD GGNNNKKKKK KKNGGKKNKQ KNKGKENDEP PKTQVYLPKP 180 IRVKAMYLQR TDSNTFTFDS NSASGSTSQE KEESPVTKES NVVSEVGNVG EESDGFGFFS 240 EDHDLVNVSD IECHSYFPTD HGNLQQLYEE YFQLLNMDHG QFELNSFAES LLD* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 6e-26 | 12 | 116 | 25 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 145 | 151 | KKKKKKK |
2 | 147 | 156 | KKKKKNGGKK |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.18230 | 0.0 | cotyledon| epicotyl| flower| hypocotyl| root| stem |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G023000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096397 | 0.0 | BT096397.1 Soybean clone JCVI-FLGm-20P11 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001238271.1 | 0.0 | MYB transcription factor MYB92 | ||||
Refseq | XP_028205840.1 | 0.0 | myb-related protein 308-like | ||||
TrEMBL | A0A445GDC3 | 0.0 | A0A445GDC3_GLYSO; Transcription factor MYB111 | ||||
TrEMBL | Q0PJJ9 | 0.0 | Q0PJJ9_SOYBN; MYB transcription factor MYB92 | ||||
STRING | GLYMA16G02570.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF31 | 34 | 817 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G49330.1 | 3e-66 | myb domain protein 111 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G023000.1.p |
Entrez Gene | 100101857 |