PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

HD-ZIP

Protein Properties

Length: 246aa MW: 28334.3 Da PI: 4.8783

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.16G021000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	58.6	1e-18	38	89	5	56
SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 5 ttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++f++eq++ Le++Fe++ + +++ +LA++lgL+ rqV +WFqN+Ra++k Glyma.16G021000.1.p 38 RRFSDEQIKSLETMFESETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWK 89 58*************************************************9 PP
2	HD-ZIP_I/II	118.8	2.9e-38	37	127	3	93
HD-ZIP_I/II 3 krrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 rr+s+eq+k+LE++Fe+e++Lep++K +lareLglqprqva+WFqn+RAR+k+kqlE+dy L+++y++l+++ e+L+ke+++L +l+ Glyma.16G021000.1.p 37 TRRFSDEQIKSLETMFESETRLEPRKKLQLARELGLQPRQVAIWFQNKRARWKSKQLERDYGILQSNYNTLASRFEALKKEKQTLLIQLQ 126 79***********************************************************************************99988 PP HD-ZIP_I/II 93 e 93 + Glyma.16G021000.1.p 127 K 127 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.47E-18	21	93	IPR009057	Homeodomain-like
SMART	SM00389	1.5E-14	28	95	IPR001356	Homeobox domain
PROSITE profile	PS50071	17.346	31	91	IPR001356	Homeobox domain
CDD	cd00086	3.74E-14	38	92	No hit	No description
Pfam	PF00046	3.3E-16	38	89	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.4E-19	38	98	IPR009057	Homeodomain-like
PRINTS	PR00031	1.0E-5	62	71	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	66	89	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.0E-5	71	87	IPR000047	Helix-turn-helix motif
Pfam	PF02183	2.8E-16	91	133	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009738	Biological Process	abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 246 aa Download sequence Send to blast
MEYSQYTTYS AEGVEAETYT SSCTTPSRSK KRNNNNTRRF SDEQIKSLET MFESETRLEP 60 RKKLQLAREL GLQPRQVAIW FQNKRARWKS KQLERDYGIL QSNYNTLASR FEALKKEKQT 120 LLIQLQKLNH LMQKPMEPSQ RCTQVEAANS MDSESENGGT MKCKAEGKPS PSSLERSEHV 180 LGVLSDDDTS IKVEDFNLED EHGLLNFVEH ADGSLTSPED WSAFESNDLF GQSTTDDYQW 240 WDFWS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.61440	0.0	root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Widely expressed. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription activator that may act as growth regulators in response to water deficit. {ECO:0000269\|PubMed:15604708, ECO:0000269\|PubMed:8771791}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00320	DAP	Transfer from AT2G46680	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.16G021000.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682, ECO:0000269\|PubMed:8771791}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031176	0.0	KT031176.1 Glycine max clone HN_WYQ_5 homeodomain/HOMEOBOX transcription factor (Glyma16g02390.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003548207.2	0.0	homeobox-leucine zipper protein ATHB-12
Swissprot	P46897	1e-62	ATHB7_ARATH; Homeobox-leucine zipper protein ATHB-7
TrEMBL	A0A0K2CTR1	0.0	A0A0K2CTR1_SOYBN; Homeodomain/HOMEOBOX transcription factor (Fragment)
TrEMBL	I1MKF3	0.0	I1MKF3_SOYBN; Uncharacterized protein
STRING	GLYMA16G02390.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5635	34	52
Representative plant	OGRP129	16	189

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G61890.1	2e-63	homeobox 12

Link Out ? help Back to Top
Phytozome	Glyma.16G021000.1.p
Entrez Gene	100811208

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhou SF, et al. Membrane-associated transcription factor peptidase, site-2 protease, antagonizes ABA signaling in Arabidopsis. New Phytol., 2015. 208(1): p. 188-97 [PMID:25919792] Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]