PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G017700.1.p
Common NameGLYMA_16G017700, LOC100783582
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 399aa    MW: 44924 Da    PI: 6.2446
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G017700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.81.9e-13184235155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +r++h ++Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Glyma.16G017700.1.p 184 QRMTHIAVERNRRRQMNDHLSVLRSLMPPS---YIQRGDQASIIGGAIDFVKELE 235
                          79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.30E-13182239No hitNo description
PROSITE profilePS5088815.751183234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.3E-16183248IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-10184235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-13184249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-10189240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MERLQGPLNS CFFGDPLGVN CLDHVLVDEE SLRLEEEEHL LISSLEDNMP FLQMLQSVES  60
PQFFPLKETN FQTLLRLQHK KNPWEGIAYF PRMEAQQVQA ALELESCVTH DMSEMQYSPV  120
KSESNELQHP LSVSCFEKKV NYECNQEPQK VSQTCPKSQP TATKERRKRK RTRPSKNKED  180
VENQRMTHIA VERNRRRQMN DHLSVLRSLM PPSYIQRGDQ ASIIGGAIDF VKELEQLLQS  240
LEAQKRTRKN EEGGGGGGSS SSSSSTMLCK PPPPPLLLLS SPHGYGMRSS PSDEVNCGDE  300
VKAENKSEAA DIKVTLIQTH VNLKIECQRK PGQLLKVIVA LEDLRLTILH LNITSSETSV  360
LYSLNLKIEE DCKLCSASDI AETVHQIFSF INGVARDH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1165170RRKRKR
2184195RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G017700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2352930.0AC235293.1 Glycine max strain Williams 82 clone GM_WBb0059D15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598866.10.0transcription factor bHLH57 isoform X2
RefseqXP_028205761.10.0transcription factor bHLH57-like isoform X1
TrEMBLA0A445GCZ50.0A0A445GCZ5_GLYSO; Transcription factor bHLH70 isoform B
TrEMBLK7MEP10.0K7MEP1_SOYBN; Uncharacterized protein
STRINGGLYMA16G02020.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68943449
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46810.19e-62bHLH family protein