PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G016400.1.p
Common NameGLYMA_16G016400, LOC106796386
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 268aa    MW: 30421.4 Da    PI: 5.4142
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G016400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM151.73.5e-47111401128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                          +p+GfrF+Ptdeelv++yLk+k+ ++++++ ++i+e+d++kvePwd p +  +k+++ ew+fFs+ d ky ++kr nr+tk+g+Wkatg+
  Glyma.16G016400.1.p  11 MPVGFRFRPTDEELVDYYLKHKLLADDFPV-HIIPEIDLCKVEPWDVPgRsVIKSDDPEWFFFSPVDYKYLKSKRFNRTTKRGFWKATGN 99 
                          699***************************.89***************6347778888******************************** PP

                  NAM  89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                          d+++    +++++g+kktLvf++gr p+g kt+Wv+hey++
  Glyma.16G016400.1.p 100 DRKIRIPgTSNVIGTKKTLVFHQGRVPRGAKTNWVIHEYHA 140
                          *****9977888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.84E-528158IPR003441NAC domain
PROSITE profilePS5100551.89711158IPR003441NAC domain
PfamPF023651.2E-2512139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MENIISICDH MPVGFRFRPT DEELVDYYLK HKLLADDFPV HIIPEIDLCK VEPWDVPGRS  60
VIKSDDPEWF FFSPVDYKYL KSKRFNRTTK RGFWKATGND RKIRIPGTSN VIGTKKTLVF  120
HQGRVPRGAK TNWVIHEYHA VTSHESQRAF VLCRLMKKAE KKNEGGIEAP SFDEGEPSIH  180
MVSDYGNPAR AEGIASVDII PGVDMDEIFR AVDQAEKFSP PVQQSPTGIG LEDFFPNSPL  240
FNARFGSENI NMQTSLEVTD DEDEFIP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-381115817165NO APICAL MERISTEM PROTEIN
1ut4_B5e-381115817165NO APICAL MERISTEM PROTEIN
1ut7_A5e-381115817165NO APICAL MERISTEM PROTEIN
1ut7_B5e-381115817165NO APICAL MERISTEM PROTEIN
3swm_A5e-381115820168NAC domain-containing protein 19
3swm_B5e-381115820168NAC domain-containing protein 19
3swm_C5e-381115820168NAC domain-containing protein 19
3swm_D5e-381115820168NAC domain-containing protein 19
3swp_A5e-381115820168NAC domain-containing protein 19
3swp_B5e-381115820168NAC domain-containing protein 19
3swp_C5e-381115820168NAC domain-containing protein 19
3swp_D5e-381115820168NAC domain-containing protein 19
4dul_A5e-381115817165NAC domain-containing protein 19
4dul_B5e-381115817165NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.281940.0meristem| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G016400.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150429e-77AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014624085.10.0NAC domain-containing protein 62
RefseqXP_028207211.10.0NAC domain-containing protein 62-like
SwissprotQ9SCK69e-55NAC62_ARATH; NAC domain-containing protein 62
TrEMBLA0A0R0FWD10.0A0A0R0FWD1_SOYBN; Uncharacterized protein
TrEMBLA0A445GCX60.0A0A445GCX6_GLYSO; NAC domain-containing protein 62 isoform A
STRINGGLYMA16G01911.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20652586
Representative plantOGRP9281314
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49530.14e-57NAC domain containing protein 62
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]