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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G016400.1.p |
Common Name | GLYMA_16G016400, LOC106796386 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
NAC |
Protein Properties |
Length: 268aa MW: 30421.4 Da PI: 5.4142 |
Description |
NAC family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G016400.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | NAM | 151.7 | 3.5e-47 | 11 | 140 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88
+p+GfrF+Ptdeelv++yLk+k+ ++++++ ++i+e+d++kvePwd p + +k+++ ew+fFs+ d ky ++kr nr+tk+g+Wkatg+
Glyma.16G016400.1.p 11 MPVGFRFRPTDEELVDYYLKHKLLADDFPV-HIIPEIDLCKVEPWDVPgRsVIKSDDPEWFFFSPVDYKYLKSKRFNRTTKRGFWKATGN 99
699***************************.89***************6347778888******************************** PP
NAM 89 dkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
d+++ +++++g+kktLvf++gr p+g kt+Wv+hey++
Glyma.16G016400.1.p 100 DRKIRIPgTSNVIGTKKTLVFHQGRVPRGAKTNWVIHEYHA 140
*****9977888***************************96 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 268 aa
Download sequence Send
to blast |
MENIISICDH MPVGFRFRPT DEELVDYYLK HKLLADDFPV HIIPEIDLCK VEPWDVPGRS 60 VIKSDDPEWF FFSPVDYKYL KSKRFNRTTK RGFWKATGND RKIRIPGTSN VIGTKKTLVF 120 HQGRVPRGAK TNWVIHEYHA VTSHESQRAF VLCRLMKKAE KKNEGGIEAP SFDEGEPSIH 180 MVSDYGNPAR AEGIASVDII PGVDMDEIFR AVDQAEKFSP PVQQSPTGIG LEDFFPNSPL 240 FNARFGSENI NMQTSLEVTD DEDEFIP*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1ut4_A | 5e-38 | 11 | 158 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-38 | 11 | 158 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-38 | 11 | 158 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-38 | 11 | 158 | 17 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-38 | 11 | 158 | 20 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-38 | 11 | 158 | 20 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-38 | 11 | 158 | 20 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-38 | 11 | 158 | 20 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-38 | 11 | 158 | 20 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-38 | 11 | 158 | 20 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-38 | 11 | 158 | 20 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-38 | 11 | 158 | 20 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-38 | 11 | 158 | 17 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-38 | 11 | 158 | 17 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Expressed in roots, rosette leaves, cauline leaves and stems. {ECO:0000269|PubMed:17158162}. |
Functional Description ? help
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Source |
Description |
UniProt | Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:20156199, PubMed:19947982). Transcriptional activator involved in response to cold stress. Mediates induction of pathogenesis-related (PR) genes independently of salicylic signaling in response to cold. Binds directly to the PR gene promoters and enhances plant resistance to pathogen infection, incorporating cold signals into pathogen resistance responses (PubMed:19947982). Plays a regulatory role in abscisic acid (ABA)-mediated drought-resistance response (PubMed:22967043). {ECO:0000269|PubMed:19947982, ECO:0000269|PubMed:20156199, ECO:0000269|PubMed:22967043}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: By salt, drought stress, abscisic acid (ABA), salicylic acid (SA) and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015042 | 9e-77 | AP015042.1 Vigna angularis var. angularis DNA, chromosome 9, almost complete sequence, cultivar: Shumari. |