PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G012900.1.p
Common NameGLYMA_16G012900
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family M-type_MADS
Protein Properties Length: 255aa    MW: 28884.7 Da    PI: 9.6869
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G012900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF61.51e-192065247
                         ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
               SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                          +e   +r+vtfskR+ g++ K  ELSvLC++e+avii s++gk+y
  Glyma.16G012900.1.p 20 EVEQRNRRHVTFSKRKLGLFNKLTELSVLCQVEAAVIITSQNGKFY 65
                         678999**************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004325.0E-211170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006621.881171IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.35E-201281IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-151333IPR002100Transcription factor, MADS-box
PfamPF003193.0E-182166IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-153348IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-154869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MNVIATRTAN KKRGEIEMKE VEQRNRRHVT FSKRKLGLFN KLTELSVLCQ VEAAVIITSQ  60
NGKFYSCGYP DPDAVVRRYL TGGPPLRRNP ADNRGQHDLL EKQRLEYEAI QNQLKEEKKR  120
LEEIQGTRNN NGFFFAAPWW NLPAEDIGFE DLQQFKTSLE CLKFNLIGAL QEKQMNSVPS  180
MQPSTVPPPM PYTVVPPMSS TMVPPISQFF SAQRFSRNQV QGDDYRRSGA IASTSSSTFA  240
SSGFGSQENY RYTN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G012900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025982036.10.0agamous-like MADS-box protein AGL62
TrEMBLA0A445GCY80.0A0A445GCY8_GLYSO; Agamous-like MADS-box protein AGL62
TrEMBLK7MEL10.0K7MEL1_SOYBN; Uncharacterized protein
STRINGGLYMA16G01541.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132271027
Representative plantOGRP1617761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-21AGAMOUS-like 62