PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G012600.5.p
Common NameGLYMA_16G012600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 299aa    MW: 32669.4 Da    PI: 5.2405
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G012600.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.5e-193079255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Glyma.16G012600.5.p 30 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDAEARRIRG 79
                         69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003803.3E-373093IPR001471AP2/ERF domain
CDDcd000189.84E-333088No hitNo description
SuperFamilySSF541713.2E-223088IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.8E-333088IPR001471AP2/ERF domain
PROSITE profilePS5103224.1183087IPR001471AP2/ERF domain
PRINTSPR003678.6E-123142IPR001471AP2/ERF domain
PfamPF008478.1E-123179IPR001471AP2/ERF domain
PRINTSPR003678.6E-125369IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLFSNYIVGS ATVESKGQAE KCAKRKRKNQ YRGIRQRPWG KWAAEIRDPR KGVRVWLGTF  60
STAEEAARAY DAEARRIRGK KAKVNFPDEP SGAAASSKRL KVNPEAQPMK ENLNTVKPKM  120
NQMFNFGHNL EGYYSPIDQV EQKPLVNQYV NPAPFPGNGV QVSPVTPSAD VTAYFSSEHS  180
SNSFDYSDLG WGEQVPKTPE ISSLLSAAPL EGAADQVQKT NNSQDVVAAQ DDSAKTLSEE  240
LADIESQLKF FETPSFLDEA WADATLASLL GGDATHDAAG NPMNLWSFDD LPSMAGVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-2129891374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.548520.0cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G012600.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5372200.0AF537220.1 Glycine max ethylene responsive protein (EREB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335962.10.0ethylene responsive protein
RefseqNP_001335963.10.0ethylene responsive protein
RefseqXP_028205738.10.0ethylene-responsive transcription factor RAP2-12-like
RefseqXP_028205739.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLA0A0R0FJR10.0A0A0R0FJR1_SOYBN; Uncharacterized protein
STRINGGLYMA16G01500.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14230.12e-48related to AP2 2