PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G012600.3.p | ||||||||
Common Name | GLYMA_16G012600 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ERF | ||||||||
Protein Properties | Length: 383aa MW: 41951.5 Da PI: 4.7586 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 59.8 | 6.6e-19 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g Glyma.16G012600.3.p 114 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDAEARRIRG 163 69*******.**********954...4************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.3E-32 | 114 | 172 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.3E-37 | 114 | 177 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.29E-32 | 114 | 172 | No hit | No description |
PROSITE profile | PS51032 | 24.118 | 114 | 171 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 4.84E-22 | 114 | 172 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 1.3E-11 | 115 | 126 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 1.2E-11 | 115 | 163 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-11 | 137 | 153 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0001666 | Biological Process | response to hypoxia | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 383 aa Download sequence Send to blast |
MCGGAIISDF IPAGPASGAR RVTADILWPS LRKRFSKPLL DDDFEAGFRE FKDDSEIEDV 60 DDEDDEDEEE LKKKPFGFSR SSNKAASKPL SRGSATVESK GQAEKCAKRK RKNQYRGIRQ 120 RPWGKWAAEI RDPRKGVRVW LGTFSTAEEA ARAYDAEARR IRGKKAKVNF PDEPSGAAAS 180 SKRLKVNPEA QPMKENLNTV KPKMNQMFNF GHNLEGYYSP IDQVEQKPLV NQYVNPAPFP 240 GNGVQVSPVT PSADVTAYFS SEHSSNSFDY SDLGWGEQVP KTPEISSLLS AAPLEGAADQ 300 VQKTNNSQDV VAAQDDSAKT LSEELADIES QLKFFETPSF LDEAWADATL ASLLGGDATH 360 DAAGNPMNLW SFDDLPSMAG VF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-20 | 113 | 173 | 13 | 74 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.54852 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo| stem| vegetative bud |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G012600.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF537220 | 0.0 | AF537220.1 Glycine max ethylene responsive protein (EREB) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001335962.1 | 0.0 | ethylene responsive protein | ||||
Refseq | NP_001335963.1 | 0.0 | ethylene responsive protein | ||||
Refseq | XP_028205738.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
Refseq | XP_028205739.1 | 0.0 | ethylene-responsive transcription factor RAP2-12-like | ||||
TrEMBL | A0A0R0FJQ7 | 0.0 | A0A0R0FJQ7_SOYBN; Uncharacterized protein | ||||
TrEMBL | A0A445GCW3 | 0.0 | A0A445GCW3_GLYSO; Ethylene-responsive transcription factor 1 isoform A | ||||
STRING | GLYMA16G01500.6 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G53910.3 | 3e-57 | related to AP2 12 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G012600.3.p |
Entrez Gene | 547957 |