PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G012600.2.p
Common NameGLYMA_16G012600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 382aa    MW: 41894.5 Da    PI: 4.7586
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G012600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.86.5e-19113162255
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++a +++++g
  Glyma.16G012600.2.p 113 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDAEARRIRG 162
                          69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.118113170IPR001471AP2/ERF domain
SuperFamilySSF541714.77E-22113171IPR016177DNA-binding domain
SMARTSM003803.3E-37113176IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-32113171IPR001471AP2/ERF domain
CDDcd000188.59E-32113171No hitNo description
PfamPF008471.1E-11114162IPR001471AP2/ERF domain
PRINTSPR003671.3E-11114125IPR001471AP2/ERF domain
PRINTSPR003671.3E-11136152IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MCGGAIISDF IPAGPASGAR RVTADILWPS LRKRFSKPLL DDDFEAGFRE FKDDSEIEDV  60
DDEDDEDEEE LKKKPFGFSR SSNKAASKPL SRSATVESKG QAEKCAKRKR KNQYRGIRQR  120
PWGKWAAEIR DPRKGVRVWL GTFSTAEEAA RAYDAEARRI RGKKAKVNFP DEPSGAAASS  180
KRLKVNPEAQ PMKENLNTVK PKMNQMFNFG HNLEGYYSPI DQVEQKPLVN QYVNPAPFPG  240
NGVQVSPVTP SADVTAYFSS EHSSNSFDYS DLGWGEQVPK TPEISSLLSA APLEGAADQV  300
QKTNNSQDVV AAQDDSAKTL SEELADIESQ LKFFETPSFL DEAWADATLA SLLGGDATHD  360
AAGNPMNLWS FDDLPSMAGV F*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-201121721374Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.548520.0cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo| stem| vegetative bud
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G012600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF5372200.0AF537220.1 Glycine max ethylene responsive protein (EREB) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001335962.10.0ethylene responsive protein
RefseqNP_001335963.10.0ethylene responsive protein
RefseqXP_028205738.10.0ethylene-responsive transcription factor RAP2-12-like
RefseqXP_028205739.10.0ethylene-responsive transcription factor RAP2-12-like
TrEMBLI1MK590.0I1MK59_SOYBN; Uncharacterized protein
STRINGGLYMA16G01500.60.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.39e-57related to AP2 12