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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G012600.1.p |
Common Name | GLYMA_16G012600 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
ERF |
Protein Properties |
Length: 383aa MW: 41951.5 Da PI: 4.7586 |
Description |
ERF family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G012600.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | AP2 | 59.8 | 6.6e-19 | 114 | 163 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
+y+G+r+++ +g+W+AeIrdp++ r++lg+f taeeAa+a++a +++++g
Glyma.16G012600.1.p 114 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFSTAEEAARAYDAEARRIRG 163
69*******.**********954...4************************998 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0001666 | Biological Process | response to hypoxia |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 383 aa
Download sequence Send
to blast |
MCGGAIISDF IPAGPASGAR RVTADILWPS LRKRFSKPLL DDDFEAGFRE FKDDSEIEDV 60 DDEDDEDEEE LKKKPFGFSR SSNKAASKPL SRGSATVESK GQAEKCAKRK RKNQYRGIRQ 120 RPWGKWAAEI RDPRKGVRVW LGTFSTAEEA ARAYDAEARR IRGKKAKVNF PDEPSGAAAS 180 SKRLKVNPEA QPMKENLNTV KPKMNQMFNF GHNLEGYYSP IDQVEQKPLV NQYVNPAPFP 240 GNGVQVSPVT PSADVTAYFS SEHSSNSFDY SDLGWGEQVP KTPEISSLLS AAPLEGAADQ 300 VQKTNNSQDV VAAQDDSAKT LSEELADIES QLKFFETPSF LDEAWADATL ASLLGGDATH 360 DAAGNPMNLW SFDDLPSMAG VF*
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Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Gma.54852 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo| stem| vegetative bud |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AF537220 | 0.0 | AF537220.1 Glycine max ethylene responsive protein (EREB) mRNA, complete cds. |