PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G007400.1.p | ||||||||
Common Name | GLYMA_16G007400, LOC100809762 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | AP2 | ||||||||
Protein Properties | Length: 575aa MW: 63424.4 Da PI: 6.4278 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 49.1 | 1.4e-15 | 244 | 303 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++gr++A+++d + g ++ ++++lg ++ +e+Aaka++ a++k++g Glyma.16G007400.1.p 244 SQYRGVTRHRWTGRYEAHLWDnSCRkEGqtRKgRQVYLGGYDKEEKAAKAYDLAALKYWG 303 78*******************655454478446*************************98 PP | |||||||
2 | AP2 | 48.1 | 2.9e-15 | 346 | 397 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I + +k +lg+f t eeAa+a++ a+ k++g Glyma.16G007400.1.p 346 SVYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 397 78****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 9.81E-17 | 244 | 313 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 6.7E-12 | 244 | 303 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.07E-21 | 244 | 313 | No hit | No description |
SMART | SM00380 | 4.6E-29 | 245 | 317 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.2E-15 | 245 | 312 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.953 | 245 | 311 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 246 | 257 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 5.8E-10 | 346 | 397 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.29E-25 | 346 | 407 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 346 | 407 | IPR016177 | DNA-binding domain |
SMART | SM00380 | 3.6E-34 | 347 | 411 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.006 | 347 | 405 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.4E-18 | 347 | 405 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.3E-6 | 387 | 407 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 575 aa Download sequence Send to blast |
MSNWLGFSLT PHLRIDEEFE RENQERGGGY HHPSPSCHPH LSVMPLRSDG SLCVADSFSH 60 SAASQEWRYD SAIGGGNSNE EGPKLEDFLG CYSNSPAKVF CQDSQPDQNQ SQNNVSKINV 120 NVAPSFCTNN SEIETGDNLT NPSSLLHSFH AYNDNSHALI PTNGMYKSWL AQTQFSSDGK 180 PSNEANGCNF QSLSLTMSPS VQNGVGAISS VQVNEDSRKR VMAKSHAREP VPRKSIDTFG 240 QRTSQYRGVT RHRWTGRYEA HLWDNSCRKE GQTRKGRQVY LGGYDKEEKA AKAYDLAALK 300 YWGPTTHINF PLSTYEKELE EMKHMTRQEF VANLRRKSSG FSRGASVYRG VTRHHQHGRW 360 QARIGRVAGN KDLYLGTFST QEEAAEAYDI AAIKFRGTSA VTNFDISRYD VKRICSSSTL 420 IAGDLAKRSP KESPAPVPAS DFNSCGSSPM PLVSQPPPLA ITDGEHSDEL SNMMWNANNS 480 DEQAQNESGG AEFNNNVTES SSSQQVSPSS NKDALNPQSP NEFGVSGADY GHGYFTLDGP 540 KYDDGNNEND HMSTNRLGNL GLVNQVPMFA LWNE* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.56626 | 0.0 | somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G007400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235913 | 0.0 | AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006598829.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Refseq | XP_028206124.1 | 0.0 | AP2-like ethylene-responsive transcription factor AIL1 isoform X1 | ||||
Swissprot | Q1PFE1 | 1e-139 | AIL1_ARATH; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | A0A445GCI2 | 0.0 | A0A445GCI2_GLYSO; AP2-like ethylene-responsive transcription factor AIL1 | ||||
TrEMBL | K7MEH0 | 0.0 | K7MEH0_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G00950.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10274 | 31 | 37 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72570.1 | 1e-122 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G007400.1.p |
Entrez Gene | 100809762 |
Publications ? help Back to Top | |||
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