PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G007100.2.p | ||||||||
Common Name | GLYMA_16G007100 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 262aa MW: 29835.7 Da PI: 8.4971 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 47.3 | 4.7e-15 | 58 | 102 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg + +E++ +++++++lG++ W++Ia++++ gRt++++k++w++ Glyma.16G007100.2.p 58 RGHISVDEEDMIIRLHRLLGNR-WALIAKRLP-GRTDNEIKNYWNTN 102 5666899***************.*********.***********986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 76 | 7 | 54 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.0E-6 | 32 | 55 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.58E-20 | 37 | 112 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.182 | 39 | 52 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 24.663 | 53 | 107 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.1E-23 | 56 | 107 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.3E-15 | 57 | 105 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.1E-14 | 58 | 103 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.64E-12 | 62 | 103 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MKPSPNMFPS MEKENGRRLP KMQLFGCIYT IIMSAGLKRC GKSCRQRWLN YLKPGIKRGH 60 ISVDEEDMII RLHRLLGNRW ALIAKRLPGR TDNEIKNYWN TNLSKKLQKH PTSSVSSLQH 120 KRHEKEKTIQ MHVSPEAPRP RRVNAVEYSK NLENGGCGNR PSTTPSPSNK VEGSSEEASF 180 SDFLIHDIDQ NQFLIADDSN SKVPQMEEDH HHNNKVELIT NNSPSSSSPS DHCHHLLPEK 240 FDPFETLLDV ELASFLGFEN D* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 4e-21 | 1 | 107 | 21 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.35584 | 0.0 | seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G007100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC235913 | 0.0 | AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_025981789.1 | 0.0 | transcription factor TT2 isoform X2 | ||||
TrEMBL | K7MEG7 | 0.0 | K7MEG7_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G00920.1 | 1e-168 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G35550.1 | 2e-40 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G007100.2.p |