PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G007100.1.p
Common NameGLYMA_16G007100, LOC547568
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 270aa    MW: 30706.4 Da    PI: 8.1731
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G007100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.11.7e-171360148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         +g+W+ eEde l ++v  +G g W ++a+  g++R++k+c+ rw++yl
  Glyma.16G007100.1.p 13 KGAWSREEDETLSKYVSIHGEGKWQKVAQNAGLKRCGKSCRQRWLNYL 60
                         79********************************************97 PP
2Myb_DNA-binding47.25e-1566110147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg  + +E++ +++++++lG++ W++Ia++++ gRt++++k++w++ 
  Glyma.16G007100.1.p  66 RGHISVDEEDMIIRLHRLLGNR-WALIAKRLP-GRTDNEIKNYWNTN 110
                          5666899***************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129425.622864IPR017930Myb domain
SuperFamilySSF466891.65E-2911107IPR009057Homeodomain-like
SMARTSM007172.8E-151262IPR001005SANT/Myb domain
PfamPF002493.3E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.4E-231467IPR009057Homeodomain-like
CDDcd001676.05E-111560No hitNo description
PROSITE profilePS5129420.40565115IPR017930Myb domain
SMARTSM007171.3E-1565113IPR001005SANT/Myb domain
PfamPF002494.3E-1466111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2368115IPR009057Homeodomain-like
CDDcd001672.88E-1170111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRRPCCPKE INKGAWSREE DETLSKYVSI HGEGKWQKVA QNAGLKRCGK SCRQRWLNYL  60
KPGIKRGHIS VDEEDMIIRL HRLLGNRWAL IAKRLPGRTD NEIKNYWNTN LSKKLQKHPT  120
SSVSSLQHKR HEKEKTIQMH VSPEAPRPRR VNAVEYSKNL ENGGCGNRPS TTPSPSNKVE  180
GSSEEASFSD FLIHDIDQNQ FLIADDSNSK VPQMEEDHHH NNKVELITNN SPSSSSPSDH  240
CHHLLPEKFD PFETLLDVEL ASFLGFEND*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-261011524128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.355840.0seed coat
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G007100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2359130.0AC235913.2 Glycine max clone GM_WBc0225O09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003548362.10.0transcription repressor MYB6 isoform X1
RefseqXP_028206601.10.0transcription repressor MYB6-like
TrEMBLA0A445GCH00.0A0A445GCH0_GLYSO; Anthocyanin regulatory C1 protein isoform A
TrEMBLI1MJZ90.0I1MJZ9_SOYBN; Uncharacterized protein
STRINGGLYMA16G00920.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF153551012
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09460.14e-55myb domain protein 6