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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.16G006500.7.p | ||||||||
Common Name | GLYMA_16G006500, LOC100782501 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 647aa MW: 71372.8 Da PI: 6.7171 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.1 | 8.5e-08 | 533 | 581 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 +WT E +lv++v + G g+W+ I r Rt ++k++w+++l Glyma.16G006500.7.p 533 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 581 7**************************99999*99************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.948 | 526 | 585 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.3E-14 | 528 | 585 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 7.1E-11 | 528 | 584 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.8E-8 | 530 | 583 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 5.54E-19 | 532 | 582 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0046686 | Biological Process | response to cadmium ion | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 647 aa Download sequence Send to blast |
METVVGIEDN DDGRFEDSGV DRSSSALSSP KQISNPIVYK LVRVEGDGKL VPATDDEVME 60 VGDFLEYENS EMHVVTNTGQ SLECISIERS SSGKLRLECL EGTAEADLGK LNAKLQILQK 120 VKEEEKHRIS CGSPVHSHEN IDSQCSADKF PVMDGKVQSE TPCQEIPSIA SSFNYTHSNQ 180 SGSIDQCSRP SEGVIESGSS ASAVYSNLKS DISMSDGEIC LDKLSIRELH ELFKVTFGRE 240 TTVKDKQWLK RRIAMSLTNS CDVSATTFII KDNKIVRKFE EDSSGNMNAG SLISSENMTE 300 EDVNFKDSSA VDACGIDDNQ VVSETRSENG LEYENYQTGQ RAAKRIRRPT KRYIEELSEN 360 ESREHNPRLS ISNKTVGFGH VSPTSNVRPA RNAFSEARTY STRLDSLGGS NVQIPCVSRV 420 RRSRPRKDIA SLMKFHPTGM GEAEKLSNKL LEHSSDAGSD FSDKVLKSRM PAKFHQPSSS 480 EPVKEQCPVI CPIELRQELR PKRADPSGHT SDDNNIVTVP TAKGGMRRKH HRAWTLVEVI 540 KLVEGVSRCG AGRWSEIKRL SFASYSYRTS VDLKDKWRNL LKASFALAPA DEGINSRKHG 600 TAPIPEKILL RVRELAEMNS QVPPNYSSSQ LASGGGSVHG DRSGYL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 420 | 426 | RRSRPRK |
2 | 420 | 427 | RRSRPRKD |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.24229 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| somatic embryo |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.16G006500.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FJ560707 | 0.0 | FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003547658.1 | 0.0 | uncharacterized protein LOC100782501 isoform X3 | ||||
Refseq | XP_028207047.1 | 0.0 | uncharacterized protein LOC114390506 isoform X3 | ||||
TrEMBL | A0A445GCP1 | 0.0 | A0A445GCP1_GLYSO; Uncharacterized protein | ||||
TrEMBL | I1MJZ3 | 0.0 | I1MJZ3_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G00870.3 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72650.1 | 1e-112 | TRF-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.16G006500.7.p |
Entrez Gene | 100782501 |