PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G006500.6.p
Common NameGLYMA_16G006500, LOC100782501
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 651aa    MW: 71906.3 Da    PI: 6.6157
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G006500.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.6e-08537585348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Glyma.16G006500.6.p 537 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 585
                          7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948530589IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.2E-11532588IPR009057Homeodomain-like
SuperFamilySSF466891.3E-14532589IPR009057Homeodomain-like
SMARTSM007178.8E-8534587IPR001005SANT/Myb domain
CDDcd116605.45E-19536586No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 651 aa     Download sequence    Send to blast
METVVGIEDN DDGRFEDSGV DRSSSALSSP KQISNPIVYK LVRVEGDGKL VPATDDEVME  60
VGDFLEYENS EMHVVTNTGQ SLECISIERS SSGKLRLECL EGTAEADLGK LNAKLQYIEQ  120
ILQKVKEEEK HRISCGSPVH SHENIDSQCS ADKFPVMDGK VQSETPCQEI PSIASSFNYT  180
HSNQSGSIDQ CSRPSEGVIE SGSSASAVYS NLKSDISMSD GEICLDKLSI RELHELFKVT  240
FGRETTVKDK QWLKRRIAMS LTNSCDVSAT TFIIKDNKIV RKFEEDSSGN MNAGSLISSE  300
NMTEEDVNFK DSSAVDACGI DDNQVVSETR SENGLEYENY QTGQRAAKRI RRPTKRYIEE  360
LSENESREHN PRLSISNKTV GFGHVSPTSN VRPARNAFSE ARTYSTRLDS LGGSNVQIPC  420
VSRVRRSRPR KDIASLMKFH PTGMGEAEKL SNKLLEHSSD AGSDFSDKVL KSRMPAKFHQ  480
PSSSEPVKEQ CPVICPIELR QELRPKRADP SGHTSDDNNI VTVPTAKGGM RRKHHRAWTL  540
VEVIKLVEGV SRCGAGRWSE IKRLSFASYS YRTSVDLKDK WRNLLKASFA LAPADEGINS  600
RKHGTAPIPE KILLRVRELA EMNSQVPPNY SSSQLASGGG SVHGDRSGYL *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1424430RRSRPRK
2424431RRSRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.242290.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G006500.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598820.10.0uncharacterized protein LOC100782501 isoform X1
RefseqXP_014624478.10.0uncharacterized protein LOC100782501 isoform X1
RefseqXP_028207043.10.0uncharacterized protein LOC114390506 isoform X1
RefseqXP_028207045.10.0uncharacterized protein LOC114390506 isoform X1
TrEMBLA0A445GCR40.0A0A445GCR4_GLYSO; Uncharacterized protein
TrEMBLK7MEG10.0K7MEG1_SOYBN; Uncharacterized protein
STRINGGLYMA16G00870.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-114TRF-like 6