PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.16G006500.5.p
Common NameGLYMA_16G006500, LOC100782501
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 644aa    MW: 71143.5 Da    PI: 6.7171
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.16G006500.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.18.4e-08530578348
                          SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          +WT  E  +lv++v + G g+W+ I r        Rt  ++k++w+++l
  Glyma.16G006500.5.p 530 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 578
                          7**************************99999*99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.948523582IPR017930Myb domain
SuperFamilySSF466891.3E-14525582IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.1E-11525581IPR009057Homeodomain-like
SMARTSM007178.8E-8527580IPR001005SANT/Myb domain
CDDcd116605.76E-19529579No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0031627Biological Processtelomeric loop formation
GO:0046686Biological Processresponse to cadmium ion
GO:0000783Cellular Componentnuclear telomere cap complex
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 644 aa     Download sequence    Send to blast
METVVGIEDN DDGRFEDSGV DRSSSALSSP KQISNPIVYK LVRVEGDGKL VPATDDEVME  60
VGDFLEYENS EMHVVTNTGQ SLECISIERS SSGKLRLECL EEADLGKLNA KLQILQKVKE  120
EEKHRISCGS PVHSHENIDS QCSADKFPVM DGKVQSETPC QEIPSIASSF NYTHSNQSGS  180
IDQCSRPSEG VIESGSSASA VYSNLKSDIS MSDGEICLDK LSIRELHELF KVTFGRETTV  240
KDKQWLKRRI AMSLTNSCDV SATTFIIKDN KIVRKFEEDS SGNMNAGSLI SSENMTEEDV  300
NFKDSSAVDA CGIDDNQVVS ETRSENGLEY ENYQTGQRAA KRIRRPTKRY IEELSENESR  360
EHNPRLSISN KTVGFGHVSP TSNVRPARNA FSEARTYSTR LDSLGGSNVQ IPCVSRVRRS  420
RPRKDIASLM KFHPTGMGEA EKLSNKLLEH SSDAGSDFSD KVLKSRMPAK FHQPSSSEPV  480
KEQCPVICPI ELRQELRPKR ADPSGHTSDD NNIVTVPTAK GGMRRKHHRA WTLVEVIKLV  540
EGVSRCGAGR WSEIKRLSFA SYSYRTSVDL KDKWRNLLKA SFALAPADEG INSRKHGTAP  600
IPEKILLRVR ELAEMNSQVP PNYSSSQLAS GGGSVHGDRS GYL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1417423RRSRPRK
2417424RRSRPRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.242290.0cotyledon| flower| hypocotyl| leaf| root| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.16G006500.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ5607070.0FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006598822.10.0uncharacterized protein LOC100782501 isoform X4
RefseqXP_028207048.10.0uncharacterized protein LOC114390506 isoform X4
TrEMBLA0A0R0FJE10.0A0A0R0FJE1_SOYBN; Uncharacterized protein
TrEMBLA0A445GCG50.0A0A445GCG5_GLYSO; Uncharacterized protein
STRINGGLYMA16G00870.30.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.11e-112TRF-like 6