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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.16G006500.5.p |
Common Name | GLYMA_16G006500, LOC100782501 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MYB_related |
Protein Properties |
Length: 644aa MW: 71143.5 Da PI: 6.7171 |
Description |
MYB_related family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.16G006500.5.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 24.1 | 8.4e-08 | 530 | 578 | 3 | 48 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
+WT E +lv++v + G g+W+ I r Rt ++k++w+++l
Glyma.16G006500.5.p 530 AWTLVEVIKLVEGVSRCGAGRWSEIKRLSFasySYRTSVDLKDKWRNLL 578
7**************************99999*99************96 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0009651 | Biological Process | response to salt stress |
GO:0031627 | Biological Process | telomeric loop formation |
GO:0046686 | Biological Process | response to cadmium ion |
GO:0000783 | Cellular Component | nuclear telomere cap complex |
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 644 aa
Download sequence Send
to blast |
METVVGIEDN DDGRFEDSGV DRSSSALSSP KQISNPIVYK LVRVEGDGKL VPATDDEVME 60 VGDFLEYENS EMHVVTNTGQ SLECISIERS SSGKLRLECL EEADLGKLNA KLQILQKVKE 120 EEKHRISCGS PVHSHENIDS QCSADKFPVM DGKVQSETPC QEIPSIASSF NYTHSNQSGS 180 IDQCSRPSEG VIESGSSASA VYSNLKSDIS MSDGEICLDK LSIRELHELF KVTFGRETTV 240 KDKQWLKRRI AMSLTNSCDV SATTFIIKDN KIVRKFEEDS SGNMNAGSLI SSENMTEEDV 300 NFKDSSAVDA CGIDDNQVVS ETRSENGLEY ENYQTGQRAA KRIRRPTKRY IEELSENESR 360 EHNPRLSISN KTVGFGHVSP TSNVRPARNA FSEARTYSTR LDSLGGSNVQ IPCVSRVRRS 420 RPRKDIASLM KFHPTGMGEA EKLSNKLLEH SSDAGSDFSD KVLKSRMPAK FHQPSSSEPV 480 KEQCPVICPI ELRQELRPKR ADPSGHTSDD NNIVTVPTAK GGMRRKHHRA WTLVEVIKLV 540 EGVSRCGAGR WSEIKRLSFA SYSYRTSVDL KDKWRNLLKA SFALAPADEG INSRKHGTAP 600 IPEKILLRVR ELAEMNSQVP PNYSSSQLAS GGGSVHGDRS GYL*
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Nucleic Localization
Signal ? help
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 |
No. |
Start |
End |
Sequence |
1 | 417 | 423 | RRSRPRK |
2 | 417 | 424 | RRSRPRKD |
Expression -- UniGene
? help Back to Top |
UniGene ID |
E-value |
Expressed in |
Gma.24229 | 0.0 | cotyledon| flower| hypocotyl| leaf| root| somatic embryo |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | FJ560707 | 0.0 | FJ560707.1 Glycine max transcription factor MYB884 mRNA, complete cds. |